BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA:15.0 nTPM
GTEx:8.2 nTPM
FANTOM5:59.6 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:13.5 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.8
2288 Male, age 75, left hemisphere 13.1
2481 Female, age 94, left hemisphere 12.4
2289 Male, age 61, right hemisphere 11.7
1781 Male, age 74, unknown 10.0
2846 Female, age 79, unknown 10.0
1857 Female, age 85, left hemisphere 9.8
1854 Male, age 80, left hemisphere 9.7
2290 Female, age 72, unknown 9.3
Claustrum
nTPM: 10.0
2292 Female, age 85, both hemispheres 13.8
1956 Male, age 74, unknown 12.2
2196 Female, age 79, unknown 11.8
2392 Female, age 94, both hemispheres 9.7
2491 Male, age 75, both hemispheres 9.5
2568 Male, age 61, both hemispheres 8.7
2198 Male, age 80, both hemispheres 8.6
2284 Female, age 91, both hemispheres 7.9
2645 Female, age 72, unknown 7.3
Globus pallidus, externus
nTPM: 13.0
2567 Female, age 72, unknown 15.5
1996 Male, age 80, right hemisphere 14.2
2646 Male, age 61, right hemisphere 12.6
2395 Male, age 75, both hemispheres 12.2
2772 Female, age 79, unknown 10.4
Globus pallidus, internus
nTPM: 15.0
2111 Female, age 85, right hemisphere 17.4
2778 Female, age 91, both hemispheres 17.2
2287 Male, age 75, right hemisphere 16.0
2037 Male, age 80, right hemisphere 15.8
2566 Female, age 72, unknown 15.5
1818 Male, age 74, unknown 12.7
2483 Female, age 94, right hemisphere 10.2
Nucleus accumbens
nTPM: 10.6
2391 Female, age 94, left hemisphere 15.1
2698 Female, age 72, unknown 12.1
2732 Male, age 80, right hemisphere 11.0
2286 Male, age 75, left hemisphere 10.9
2824 Male, age 61, right hemisphere 9.9
1806 Female, age 85, left hemisphere 9.5
1783 Male, age 74, unknown 8.2
1856 Female, age 91, right hemisphere 7.8
Nucleus basalis of Meynert
nTPM: 11.2
2569 Male, age 61, both hemispheres 11.9
2821 Male, age 75, both hemispheres 11.7
2484 Female, age 94, left hemisphere 11.5
2393 Male, age 80, right hemisphere 9.8
Nucleus of the diagonal band
nTPM: 8.1
1979 Male, age 74, unknown 9.9
2195 Female, age 85, both hemispheres 8.2
2029 Male, age 61, right hemisphere 8.0
2775 Male, age 80, right hemisphere 7.5
1812 Female, age 91, both hemispheres 6.8
Olfactory tubercle
nTPM: 8.3
2856 Male, age 75, right hemisphere 10.1
2487 Female, age 94, left hemisphere 8.9
1846 Male, age 80, right hemisphere 7.9
1998 Female, age 91, both hemispheres 6.1
Putamen
nTPM: 10.6
2482 Female, age 94, left hemisphere 13.0
2647 Male, age 75, left hemisphere 12.5
1829 Male, age 74, unknown 11.7
2489 Female, age 72, unknown 10.9
1937 Female, age 91, right hemisphere 9.8
2466 Female, age 79, unknown 8.2
1838 Male, age 80, right hemisphere 8.1
Septal nuclei
nTPM: 8.8
2629 Female, age 94, right hemisphere 11.0
2394 Male, age 61, left hemisphere 9.2
2199 Male, age 80, right hemisphere 9.1
1960 Male, age 74, unknown 8.7
2009 Female, age 91, both hemispheres 8.1
2031 Female, age 72, unknown 8.1
2059 Female, age 85, both hemispheres 7.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 17.2
Min nTPM: 3.9
Std nTPM: 2.0
Median nTPM: 8.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 16.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 13.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 12.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 12.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 12.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 12.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 12.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 12.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.8
Samples: 246

Max nTPM: 15.9
Min nTPM: 3.7
Std nTPM: 1.9
Median nTPM: 7.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 15.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 14.9
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 14.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 14.0
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 13.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 13.2
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 13.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 13.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 12.7
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 12.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 11.8
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Brain - Putamen (basal ganglia)
Average nTPM: 8.1
Samples: 205

Max nTPM: 20.6
Min nTPM: 3.2
Std nTPM: 2.2
Median nTPM: 7.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 20.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 15.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 15.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 14.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 14.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 13.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 13.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 12.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 12.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 12.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 11.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.6
FF:10164-103B2 76 years, female 59.6
Globus pallidus
Scaled Tags Per Million: 51.7
FF:10161-103A8 76 years, female 63.2
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 27.8
FF:10037-101F1 23-56 years, mixed 27.8
Putamen
Scaled Tags Per Million: 48.7
FF:10176-103C5 60 years, female 48.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Caudate
nTPM: 18.7
Samples: 4

Max nTPM: 19.9
Min nTPM: 16.7
Sample A Female 19.9
Sample B Female 16.7
Sample C Male 19.3
Sample D Male 18.8
Putamen
nTPM: 20.0
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.3
Sample A Female 20.1
Sample B Female 17.3
Sample C Male 22.1
Sample D Male 20.4
Septum
nTPM: 20.0
Samples: 4

Max nTPM: 21.6
Min nTPM: 18.3
Sample A Female 19.5
Sample B Female 18.3
Sample C Male 20.5
Sample D Male 21.6
Ventral pallidum
nTPM: 19.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 17.8
Sample A Female 19.6
Sample B Female 17.8
Sample C Male 19.7
Sample D Male 20.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.6
Samples: 4

Max nTPM: 13.8
Min nTPM: 10.8
Sample A Male 13.8
Sample B Male 12.9
Sample C Female 12.9
Sample D Female 10.8
Septum
nTPM: 12.6
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.7
Sample A Male 13.0
Sample B Male 13.2
Sample C Female 11.7
Sample D Female 12.6
Ventral forebrain
nTPM: 13.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.8
Sample A Male 14.1
Sample B Male 14.3
Sample C Female 11.8
Sample D Female 13.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
69134310 Antisense, RP_050321_02_G05, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.6
69134310 Antisense, RP_050321_02_G05, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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