MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:237.3 nTPM
HPA:237.3 nTPM
GTEx:270.0 nTPM
FANTOM5:234.4 Scaled Tags Per Million
Mouse:0.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 237.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.5
1870 Female, age 42, unknown 233.9
2666 Male, age 74, left hemisphere 233.7
1827 Male, age 72, unknown 229.4
1833 Male, age 53, unknown 228.9
2828 Female, age 72, unknown 228.2
1830 Male, age 51, unknown 227.5
2019 Male, age 18, unknown 226.6
2411 Female, age 72, unknown 226.0
2586 Male, age 75, left hemisphere 225.6
2219 Male, age 76, both hemispheres 225.0
Dorsal raphe nucleus
nTPM: 224.6
1828 Male, age 53, unknown 226.8
2750 Male, age 76, both hemispheres 226.6
2047 Male, age 72, unknown 224.7
2016 Female, age 72, unknown 222.8
2298 Female, age 72, unknown 222.2
Inferior colliculus
nTPM: 230.3
2849 Male, age 72, unknown 234.5
1890 Male, age 53, unknown 233.5
1848 Female, age 42, unknown 227.8
2097 Female, age 72, unknown 225.3
Median raphe nucleus
nTPM: 237.3
2220 Male, age 76, midline 237.3
Pedunculopontine tegmental nucleus
nTPM: 233.6
2338 Male, age 61, both hemispheres 239.2
2334 Male, age 80, both hemispheres 235.7
1921 Female, age 85, both hemispheres 225.9
Periaquaductal grey, anterior
nTPM: 225.5
2502 Female, age 75, unknown 228.4
1947 Male, age 18, unknown 224.7
1795 Male, age 51, unknown 223.4
Periaquaductal grey, dorsal
nTPM: 227.9
2850 Male, age 76, both hemispheres 233.7
1840 Male, age 53, unknown 229.1
1831 Male, age 72, unknown 227.1
2464 Female, age 72, unknown 221.5
Periaquaductal grey, lateral
nTPM: 224.3
2140 Male, age 76, both hemispheres 228.4
2053 Male, age 18, unknown 227.0
2272 Male, age 74, both hemispheres 217.4
Pretectal area
nTPM: 226.8
1817 Female, age 42, unknown 233.4
1816 Male, age 51, unknown 232.8
1815 Male, age 53, unknown 230.8
2825 Male, age 18, unknown 230.7
1944 Female, age 72, unknown 230.1
2407 Male, age 75, both hemispheres 227.2
2007 Male, age 72, unknown 226.9
2667 Female, age 75, unknown 223.2
2224 Female, age 72, unknown 222.1
2316 Male, age 76, right hemisphere 221.5
2273 Male, age 74, both hemispheres 215.6
Red nucleus
nTPM: 234.0
2503 Female, age 72, unknown 244.4
2725 Female, age 75, unknown 237.5
2584 Male, age 75, left hemisphere 236.3
1865 Male, age 51, unknown 236.2
2588 Male, age 74, left hemisphere 234.7
1821 Female, age 72, unknown 233.9
2769 Male, age 72, unknown 232.6
2227 Male, age 72, unknown 230.9
2823 Male, age 76, right hemisphere 230.9
2785 Male, age 18, unknown 230.6
1954 Female, age 42, unknown 230.5
1904 Male, age 53, unknown 230.1
Substantia nigra
nTPM: 233.6
1916 Female, age 42, unknown 238.2
2409 Female, age 72, unknown 237.9
2699 Male, age 18, unknown 237.9
2665 Male, age 74, both hemispheres 236.8
1889 Female, age 72, unknown 235.1
1851 Male, age 51, unknown 234.8
2241 Male, age 72, unknown 231.0
2590 Female, age 75, unknown 230.4
1941 Male, age 53, unknown 230.1
2583 Male, age 75, right hemisphere 223.4
Superior colliculus
nTPM: 229.3
2587 Male, age 74, left hemisphere 237.2
1913 Female, age 42, unknown 234.5
1895 Male, age 76, right hemisphere 232.0
1995 Male, age 72, unknown 229.8
1796 Male, age 53, unknown 229.7
2668 Female, age 75, unknown 229.1
1839 Male, age 51, unknown 227.5
2087 Female, age 72, unknown 226.8
2261 Male, age 18, unknown 223.5
2664 Male, age 75, both hemispheres 223.0
Ventral tegmental area
nTPM: 231.1
2223 Female, age 72, unknown 236.8
1915 Female, age 42, unknown 235.1
2218 Male, age 76, both hemispheres 233.9
2410 Female, age 72, unknown 229.8
1942 Male, age 51, unknown 226.0
2021 Male, age 53, unknown 224.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 270.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 270.0
Samples: 139

Max nTPM: 827.0
Min nTPM: 138.4
Std nTPM: 95.4
Median nTPM: 250.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 827.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 703.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 527.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 488.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 437.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 422.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 414.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 409.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 401.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 400.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 389.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 234.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 234.4
FF:10158-103A5 76 years, female 234.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.