BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:241.7 nTPM
HPA:241.7 nTPM
GTEx:207.6 nTPM
FANTOM5:217.7 Scaled Tags Per Million
Mouse:0.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 241.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 229.6
2846 Female, age 79, unknown 242.0
2290 Female, age 72, unknown 234.0
1854 Male, age 80, left hemisphere 231.2
1857 Female, age 85, left hemisphere 230.3
2288 Male, age 75, left hemisphere 228.4
1781 Male, age 74, unknown 227.6
2481 Female, age 94, left hemisphere 225.1
2289 Male, age 61, right hemisphere 218.5
Claustrum
nTPM: 229.1
2196 Female, age 79, unknown 245.5
1956 Male, age 74, unknown 236.9
2198 Male, age 80, both hemispheres 229.3
2491 Male, age 75, both hemispheres 229.1
2292 Female, age 85, both hemispheres 228.1
2392 Female, age 94, both hemispheres 227.2
2568 Male, age 61, both hemispheres 226.4
2284 Female, age 91, both hemispheres 220.5
2645 Female, age 72, unknown 219.3
Globus pallidus, externus
nTPM: 239.3
1996 Male, age 80, right hemisphere 247.0
2772 Female, age 79, unknown 240.3
2567 Female, age 72, unknown 237.8
2395 Male, age 75, both hemispheres 236.1
2646 Male, age 61, right hemisphere 235.2
Globus pallidus, internus
nTPM: 241.7
2287 Male, age 75, right hemisphere 255.5
2483 Female, age 94, right hemisphere 251.7
2037 Male, age 80, right hemisphere 241.1
2778 Female, age 91, both hemispheres 239.9
2566 Female, age 72, unknown 239.4
1818 Male, age 74, unknown 234.0
2111 Female, age 85, right hemisphere 230.2
Nucleus accumbens
nTPM: 230.4
2698 Female, age 72, unknown 250.6
2391 Female, age 94, left hemisphere 235.3
1783 Male, age 74, unknown 229.3
1856 Female, age 91, right hemisphere 228.5
1806 Female, age 85, left hemisphere 227.7
2286 Male, age 75, left hemisphere 226.2
2732 Male, age 80, right hemisphere 222.8
2824 Male, age 61, right hemisphere 222.4
Nucleus basalis of Meynert
nTPM: 233.9
2821 Male, age 75, both hemispheres 243.7
2569 Male, age 61, both hemispheres 237.4
2393 Male, age 80, right hemisphere 227.5
2484 Female, age 94, left hemisphere 227.0
Nucleus of the diagonal band
nTPM: 223.4
2195 Female, age 85, both hemispheres 225.9
1979 Male, age 74, unknown 225.2
1812 Female, age 91, both hemispheres 225.0
2775 Male, age 80, right hemisphere 222.6
2029 Male, age 61, right hemisphere 218.2
Olfactory tubercle
nTPM: 220.3
1846 Male, age 80, right hemisphere 225.5
2856 Male, age 75, right hemisphere 222.1
1998 Female, age 91, both hemispheres 216.7
2487 Female, age 94, left hemisphere 216.7
Putamen
nTPM: 230.3
1829 Male, age 74, unknown 234.0
2647 Male, age 75, left hemisphere 233.5
2489 Female, age 72, unknown 230.8
2482 Female, age 94, left hemisphere 230.4
2466 Female, age 79, unknown 230.1
1838 Male, age 80, right hemisphere 227.3
1937 Female, age 91, right hemisphere 225.6
Septal nuclei
nTPM: 221.6
2629 Female, age 94, right hemisphere 227.6
2199 Male, age 80, right hemisphere 225.5
1960 Male, age 74, unknown 222.3
2031 Female, age 72, unknown 221.7
2059 Female, age 85, both hemispheres 220.1
2394 Male, age 61, left hemisphere 218.6
2009 Female, age 91, both hemispheres 215.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 207.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 182.2
Samples: 246

Max nTPM: 388.8
Min nTPM: 83.8
Std nTPM: 50.7
Median nTPM: 168.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 388.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 376.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 356.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 350.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 348.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 346.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 330.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 323.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 316.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 311.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 287.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 203.2
Samples: 246

Max nTPM: 495.9
Min nTPM: 106.7
Std nTPM: 56.4
Median nTPM: 194.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 495.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 392.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 388.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 372.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 370.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 350.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 348.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 335.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 333.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 328.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 322.8
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Brain - Putamen (basal ganglia)
Average nTPM: 207.6
Samples: 205

Max nTPM: 480.5
Min nTPM: 90.1
Std nTPM: 57.3
Median nTPM: 198.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 480.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 432.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 425.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 366.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 360.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 357.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 350.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 324.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 310.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 305.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 301.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 217.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 179.1
FF:10164-103B2 76 years, female 179.1
Globus pallidus
Scaled Tags Per Million: 189.2
FF:10161-103A8 76 years, female 215.9
FF:10175-103C4 60 years, female 162.6
Nucleus accumbens
Scaled Tags Per Million: 164.7
FF:10037-101F1 23-56 years, mixed 164.7
Putamen
Scaled Tags Per Million: 217.7
FF:10176-103C5 60 years, female 217.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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