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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.6 nTPM
HPA:101.6 nTPM
GTEx:103.9 nTPM
FANTOM5:523.1 Scaled Tags Per Million
Pig:9.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 101.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 80.2
2565 Male, age 75, midline 95.7
2816 Male, age 47, midline 79.6
2048 Male, age 55, midline 79.3
1981 Female, age 72, midline 76.0
2194 Female, age 79, both hemispheres 70.3
Cervical spinal cord, dorsal horn
nTPM: 78.0
2296 Male, age 66, both hemispheres 88.5
2721 Male, age 90, both hemispheres 82.7
2069 Male, age 47, both hemispheres 78.4
2297 Male, age 75, both hemispheres 76.3
2173 Female, age 72, unknown 72.0
1877 Male, age 55, unknown 70.1
Cervical spinal cord, ventral horn
nTPM: 101.6
2098 Female, age 72, unknown 141.7
2809 Male, age 90, both hemispheres 137.0
2480 Male, age 75, both hemispheres 107.9
2295 Male, age 66, both hemispheres 87.0
2068 Male, age 55, unknown 70.1
2820 Female, age 79, both hemispheres 65.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 103.9
Samples: 159

Max nTPM: 895.3
Min nTPM: 9.5
Std nTPM: 126.8
Median nTPM: 58.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 895.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 831.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 552.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 414.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 379.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 365.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 320.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 319.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 295.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 290.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 282.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 279.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 274.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 274.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 272.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 237.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 237.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 223.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 222.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 217.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 214.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 209.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 209.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 205.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 200.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 198.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 197.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 192.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 182.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 162.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 159.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 153.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 146.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 145.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 141.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 140.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 138.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 136.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 134.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 133.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 133.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 131.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 129.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 122.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 116.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 112.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 111.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 109.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 104.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 99.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 97.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 96.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 89.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 88.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 86.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 84.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 83.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 79.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 78.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 78.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 78.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 78.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 77.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 75.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 74.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 72.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 69.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 65.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 65.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 64.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 63.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 63.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 59.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 58.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 57.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 55.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 54.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 52.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 51.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 51.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 50.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 46.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 46.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 46.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 45.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 45.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 44.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 44.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 43.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 42.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 42.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 41.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 41.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 40.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 39.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 38.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 38.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 37.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 37.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 36.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 35.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 34.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 34.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 33.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 33.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 31.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 31.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 31.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 30.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 30.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 30.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 29.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 29.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 28.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 28.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 28.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 28.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 27.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 27.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 27.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 24.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 24.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 24.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 24.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 23.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 23.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 22.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 21.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 21.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 21.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 21.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 20.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 20.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 19.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 19.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 18.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 18.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 18.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 18.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 18.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 17.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 16.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 16.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 15.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 14.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 14.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 14.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 12.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 11.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 10.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 10.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 9.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 523.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 523.1
FF:10181-103D1 60 years, female 817.8
FF:10159-103A6 76 years, female 228.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.1
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.7
Sample A Female 8.1
Sample B Female 9.0
Sample C Male 11.4
Sample D Male 7.7
Ventral spinal cord
nTPM: 7.4
Samples: 4

Max nTPM: 8.0
Min nTPM: 6.6
Sample A Female 8.0
Sample B Female 7.4
Sample C Male 6.6
Sample D Male 7.7

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