MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.1 nTPM
HPA:107.1 nTPM
GTEx:126.4 nTPM
FANTOM5:56.6 Scaled Tags Per Million
Pig:165.2 nTPM
Mouse:292.9 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.9
2019 Male, age 18, unknown 111.6
2411 Female, age 72, unknown 103.4
1827 Male, age 72, unknown 95.4
2219 Male, age 76, both hemispheres 91.1
1870 Female, age 42, unknown 91.0
2828 Female, age 72, unknown 91.0
1833 Male, age 53, unknown 88.7
1830 Male, age 51, unknown 88.5
2666 Male, age 74, left hemisphere 84.2
2586 Male, age 75, left hemisphere 84.0
Dorsal raphe nucleus
nTPM: 98.5
2298 Female, age 72, unknown 106.8
1828 Male, age 53, unknown 104.0
2047 Male, age 72, unknown 97.6
2750 Male, age 76, both hemispheres 96.4
2016 Female, age 72, unknown 87.5
Inferior colliculus
nTPM: 92.7
2097 Female, age 72, unknown 101.6
1890 Male, age 53, unknown 94.7
1848 Female, age 42, unknown 91.3
2849 Male, age 72, unknown 83.2
Median raphe nucleus
nTPM: 95.8
2220 Male, age 76, midline 95.8
Pedunculopontine tegmental nucleus
nTPM: 97.1
1921 Female, age 85, both hemispheres 99.9
2334 Male, age 80, both hemispheres 97.9
2338 Male, age 61, both hemispheres 93.6
Periaquaductal grey, anterior
nTPM: 91.4
2502 Female, age 75, unknown 93.2
1947 Male, age 18, unknown 90.6
1795 Male, age 51, unknown 90.5
Periaquaductal grey, dorsal
nTPM: 87.4
2850 Male, age 76, both hemispheres 88.3
1840 Male, age 53, unknown 87.7
2464 Female, age 72, unknown 87.3
1831 Male, age 72, unknown 86.4
Periaquaductal grey, lateral
nTPM: 88.4
2272 Male, age 74, both hemispheres 93.9
2140 Male, age 76, both hemispheres 86.7
2053 Male, age 18, unknown 84.4
Pretectal area
nTPM: 99.9
2007 Male, age 72, unknown 111.9
1816 Male, age 51, unknown 111.3
1944 Female, age 72, unknown 111.1
1817 Female, age 42, unknown 108.4
2667 Female, age 75, unknown 105.3
1815 Male, age 53, unknown 101.0
2273 Male, age 74, both hemispheres 96.8
2224 Female, age 72, unknown 93.8
2316 Male, age 76, right hemisphere 89.8
2825 Male, age 18, unknown 86.7
2407 Male, age 75, both hemispheres 82.4
Red nucleus
nTPM: 96.3
1821 Female, age 72, unknown 108.6
2785 Male, age 18, unknown 104.0
2503 Female, age 72, unknown 98.2
2823 Male, age 76, right hemisphere 98.0
2725 Female, age 75, unknown 97.3
1904 Male, age 53, unknown 95.8
1865 Male, age 51, unknown 95.5
1954 Female, age 42, unknown 94.8
2227 Male, age 72, unknown 93.0
2769 Male, age 72, unknown 92.9
2588 Male, age 74, left hemisphere 89.0
2584 Male, age 75, left hemisphere 88.4
Substantia nigra
nTPM: 107.1
1916 Female, age 42, unknown 124.5
2241 Male, age 72, unknown 121.8
2409 Female, age 72, unknown 115.2
1851 Male, age 51, unknown 112.0
1889 Female, age 72, unknown 109.9
1941 Male, age 53, unknown 108.1
2665 Male, age 74, both hemispheres 97.9
2699 Male, age 18, unknown 96.4
2590 Female, age 75, unknown 95.1
2583 Male, age 75, right hemisphere 89.6
Superior colliculus
nTPM: 92.3
2087 Female, age 72, unknown 105.6
1895 Male, age 76, right hemisphere 98.4
2587 Male, age 74, left hemisphere 96.2
2261 Male, age 18, unknown 94.1
1796 Male, age 53, unknown 92.7
2668 Female, age 75, unknown 92.2
1839 Male, age 51, unknown 88.6
1913 Female, age 42, unknown 87.2
1995 Male, age 72, unknown 86.4
2664 Male, age 75, both hemispheres 81.4
Ventral tegmental area
nTPM: 99.8
2410 Female, age 72, unknown 113.7
1915 Female, age 42, unknown 107.2
2218 Male, age 76, both hemispheres 101.7
2223 Female, age 72, unknown 93.2
1942 Male, age 51, unknown 93.1
2021 Male, age 53, unknown 89.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 126.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 126.4
Samples: 139

Max nTPM: 261.7
Min nTPM: 69.7
Std nTPM: 32.8
Median nTPM: 120.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 261.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 228.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 214.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 204.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 198.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 193.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 182.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 176.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 173.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.6
FF:10158-103A5 76 years, female 56.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.2
Pig sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 183.7
Min nTPM: 131.0
Sample A Female 183.7
Sample B Female 131.0
Sample C Male 166.4
Sample D Male 133.4
Periaqueductal gray
nTPM: 107.7
Samples: 3

Max nTPM: 120.3
Min nTPM: 95.7
Sample B Female 107.2
Sample C Male 120.3
Sample D Male 95.7
Substantia nigra
nTPM: 140.0
Samples: 4

Max nTPM: 178.0
Min nTPM: 111.0
Sample A Female 178.0
Sample B Female 111.0
Sample C Male 148.8
Sample D Male 122.2
Superior colliculi
nTPM: 165.2
Samples: 4

Max nTPM: 202.3
Min nTPM: 123.3
Sample A Female 185.2
Sample B Female 123.3
Sample C Male 202.3
Sample D Male 149.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 292.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 292.9
Samples: 4

Max nTPM: 300.9
Min nTPM: 281.5
Sample A Male 289.8
Sample B Male 300.9
Sample C Female 281.5
Sample D Female 299.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
1888 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 5.7
1889 Antisense, RP_Baylor_103100, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.