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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:198.4 nTPM
GTEx:198.4 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:89.7 nTPM
Mouse:323.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 198.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 198.4
Samples: 105

Max nTPM: 338.2
Min nTPM: 124.2
Std nTPM: 39.7
Median nTPM:
490_1 67 years, female 338.2
491_1 89 years, female 318.1
375_1 74 years, female 301.4
413_1 59 years, female 292.7
162_1 79 years, female 265.9
495_1 57 years, female 256.9
379_1 60 years, male 256.2
307_1 66 years, female 255.2
308_1 70 years, female 254.3
414_1 84 years, female 253.9
415_1 77 years, female 252.1
386_1 76 years, male 246.8
501_1 88 years, male 246.1
35_1 74 years, female 244.1
466_1 57 years, female 243.0
43_1 64 years, female 240.6
237_1 82 years, male 237.7
6_1 73 years, female 237.6
229_1 69 years, female 231.2
145_1 84 years, male 230.9
396_1 62 years, male 224.5
347_1 72 years, male 223.3
149_1 88 years, male 222.2
42_1 85 years, male 220.9
322_1 76 years, male 220.8
117_1 61 years, male 220.0
81_1 67 years, male 219.8
315_1 62 years, female 219.4
316_1 62 years, male 219.3
384_1 83 years, male 218.5
217_1 76 years, male 216.8
218_1 71 years, female 216.1
142_1 61 years, female 215.8
139_1 64 years, female 214.6
120_1 70 years, female 213.2
313_1 79 years, female 213.1
324_1 76 years, male 212.1
32_1 67 years, male 211.0
173_1 67 years, male 208.8
518_1 75 years, female 206.9
153_1 70 years, female 206.2
119_1 70 years, female 205.8
447_1 81 years, male 205.8
41_1 94 years, female 204.9
17_1 71 years, male 204.1
266_1 85 years, male 201.7
126_1 63 years, male 201.3
468_1 89 years, male 201.0
311_1 78 years, male 199.5
265_1 87 years, male 198.5
89_1 63 years, male 196.2
321_1 62 years, female 195.3
389_1 86 years, female 194.5
243_1 75 years, male 192.7
9_1 66 years, female 192.3
246_1 77 years, male 192.1
4_1 88 years, female 189.6
18_1 88 years, male 189.0
137_1 83 years, male 188.0
2_1 77 years, female 187.9
526_1 61 years, male 186.2
377_1 82 years, female 184.0
115_1 83 years, male 183.9
376_1 75 years, female 182.7
189_1 76 years, male 182.5
354_1 81 years, female 180.9
499_1 55 years, female 180.8
109_1 81 years, female 175.9
404_1 82 years, female 175.2
452_1 88 years, female 175.2
99_1 64 years, male 175.0
425_1 59 years, female 174.9
335_1 73 years, female 174.7
288_1 66 years, female 174.4
355_1 70 years, female 173.3
254_1 77 years, female 173.1
286_1 68 years, female 172.4
480_1 63 years, male 170.6
349_1 83 years, male 170.2
319_1 81 years, male 169.9
405_1 91 years, male 167.5
352_1 62 years, male 166.5
351_1 91 years, male 163.7
314_1 67 years, male 163.4
353_1 82 years, female 163.4
264_1 73 years, female 161.8
172_1 72 years, female 160.7
350_1 84 years, female 160.5
506_1 65 years, male 160.4
177_1 74 years, male 159.3
348_1 84 years, male 154.8
295_1 61 years, female 153.8
317_1 60 years, male 153.7
291_1 76 years, male 151.5
394_1 75 years, female 150.5
406_1 79 years, male 148.5
251_1 78 years, male 147.6
320_1 89 years, female 147.4
503_1 68 years, male 147.4
517_1 88 years, male 146.7
318_1 68 years, male 145.0
292_1 71 years, male 140.4
293_1 68 years, female 138.0
356_1 87 years, female 135.6
163_1 78 years, male 124.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 78.0
FF:10030-101E3 24-65 years, mixed 78.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.7
Pig sample Sample description nTPM
Retina
nTPM: 89.7
Samples: 4

Max nTPM: 101.9
Min nTPM: 78.4
Sample A Female 78.4
Sample B Female 97.8
Sample C Male 101.9
Sample D Male 80.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 323.2
Mouse sample Sample description nTPM
Retina
nTPM: 323.3
Samples: 4

Max nTPM: 340.4
Min nTPM: 310.3
Sample A Male 340.4
Sample B Male 312.7
Sample C Female 329.6
Sample D Female 310.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.