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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:105.0 nTPM
HPA:105.0 nTPM
GTEx:118.4 nTPM
FANTOM5:85.8 Scaled Tags Per Million
Pig:163.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 105.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 98.7
1981 Female, age 72, midline 111.6
2194 Female, age 79, both hemispheres 100.7
2048 Male, age 55, midline 97.6
2565 Male, age 75, midline 94.9
2816 Male, age 47, midline 88.6
Cervical spinal cord, dorsal horn
nTPM: 105.0
2173 Female, age 72, unknown 124.2
2069 Male, age 47, both hemispheres 111.8
2296 Male, age 66, both hemispheres 110.0
2297 Male, age 75, both hemispheres 96.9
1877 Male, age 55, unknown 96.6
2721 Male, age 90, both hemispheres 90.6
Cervical spinal cord, ventral horn
nTPM: 103.9
2098 Female, age 72, unknown 115.9
2480 Male, age 75, both hemispheres 108.8
2068 Male, age 55, unknown 103.3
2809 Male, age 90, both hemispheres 102.9
2295 Male, age 66, both hemispheres 97.6
2820 Female, age 79, both hemispheres 95.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 118.4
Samples: 159

Max nTPM: 172.2
Min nTPM: 73.0
Std nTPM: 18.2
Median nTPM: 117.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 172.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 167.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 165.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 163.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 158.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 153.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 149.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 149.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 148.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 146.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 146.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 142.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 142.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 141.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 140.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 138.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 138.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 138.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 136.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 135.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 135.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 134.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 134.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 134.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 134.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 133.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 133.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 132.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 131.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 131.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 130.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 129.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 129.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 129.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 129.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 129.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 128.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 128.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 127.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 127.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 127.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 125.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 125.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 125.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 125.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 124.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 123.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 123.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 123.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 122.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 121.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 121.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 120.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 120.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 120.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 120.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 119.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 119.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 119.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 119.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 119.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 118.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 118.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 118.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 118.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 118.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 118.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 118.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 117.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 117.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 117.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 115.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 115.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 114.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 114.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 114.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 114.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 113.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 113.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 112.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 111.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 111.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 111.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 110.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 110.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 110.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 110.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 109.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 109.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 109.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 108.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 108.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 107.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 107.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 107.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 106.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 105.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 105.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 104.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 104.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 104.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 104.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 104.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 104.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 104.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 103.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 103.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 101.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 100.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 100.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 99.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 99.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 99.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 98.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 97.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 97.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 97.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 96.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 96.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 94.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 93.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 92.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 91.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 89.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 89.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 86.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 86.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 85.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 85.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 83.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 75.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 73.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.8
FF:10181-103D1 60 years, female 130.1
FF:10159-103A6 76 years, female 41.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 139.6
Samples: 4

Max nTPM: 148.0
Min nTPM: 129.7
Sample A Female 129.7
Sample B Female 137.5
Sample C Male 148.0
Sample D Male 143.2
Ventral spinal cord
nTPM: 163.3
Samples: 4

Max nTPM: 170.9
Min nTPM: 156.1
Sample A Female 158.2
Sample B Female 170.9
Sample C Male 167.9
Sample D Male 156.1

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