MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.1 nTPM
HPA:81.1 nTPM
GTEx:38.9 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:111.6 nTPM
Mouse:62.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
2219 Male, age 76, both hemispheres 51.4
1833 Male, age 53, unknown 7.5
1830 Male, age 51, unknown 5.2
2411 Female, age 72, unknown 2.4
1870 Female, age 42, unknown 0.7
2019 Male, age 18, unknown 0.5
2586 Male, age 75, left hemisphere 0.5
2666 Male, age 74, left hemisphere 0.2
2828 Female, age 72, unknown 0.2
1827 Male, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 31.6
2047 Male, age 72, unknown 72.8
2750 Male, age 76, both hemispheres 44.7
2298 Female, age 72, unknown 34.5
2016 Female, age 72, unknown 3.5
1828 Male, age 53, unknown 2.7
Inferior colliculus
nTPM: 0.2
1890 Male, age 53, unknown 0.8
1848 Female, age 42, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 81.1
2220 Male, age 76, midline 81.1
Pedunculopontine tegmental nucleus
nTPM: 7.6
2334 Male, age 80, both hemispheres 21.7
2338 Male, age 61, both hemispheres 0.5
1921 Female, age 85, both hemispheres 0.4
Periaquaductal grey, anterior
nTPM: 0.4
2502 Female, age 75, unknown 1.2
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 3.8
2850 Male, age 76, both hemispheres 9.0
1840 Male, age 53, unknown 3.3
2464 Female, age 72, unknown 2.9
1831 Male, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 0.6
2140 Male, age 76, both hemispheres 1.0
2053 Male, age 18, unknown 0.4
2272 Male, age 74, both hemispheres 0.2
Pretectal area
nTPM: 0.5
2224 Female, age 72, unknown 2.7
1944 Female, age 72, unknown 1.4
2667 Female, age 75, unknown 1.2
1815 Male, age 53, unknown 0.4
2825 Male, age 18, unknown 0.2
2273 Male, age 74, both hemispheres 0.1
1816 Male, age 51, unknown 0.0
1817 Female, age 42, unknown 0.0
2007 Male, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 0.4
2725 Female, age 75, unknown 1.6
2584 Male, age 75, left hemisphere 1.1
1821 Female, age 72, unknown 0.7
1904 Male, age 53, unknown 0.4
2588 Male, age 74, left hemisphere 0.4
2227 Male, age 72, unknown 0.3
2769 Male, age 72, unknown 0.3
2785 Male, age 18, unknown 0.2
1865 Male, age 51, unknown 0.1
1954 Female, age 42, unknown 0.0
2503 Female, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 75.0
2241 Male, age 72, unknown 167.0
1916 Female, age 42, unknown 163.1
2699 Male, age 18, unknown 141.9
1851 Male, age 51, unknown 101.8
1941 Male, age 53, unknown 67.9
2409 Female, age 72, unknown 60.5
2665 Male, age 74, both hemispheres 23.4
1889 Female, age 72, unknown 19.0
2590 Female, age 75, unknown 3.1
2583 Male, age 75, right hemisphere 2.1
Superior colliculus
nTPM: 0.3
2668 Female, age 75, unknown 1.3
2087 Female, age 72, unknown 0.9
1913 Female, age 42, unknown 0.4
1796 Male, age 53, unknown 0.3
2587 Male, age 74, left hemisphere 0.2
1995 Male, age 72, unknown 0.1
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
2261 Male, age 18, unknown 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 56.2
1915 Female, age 42, unknown 93.8
2218 Male, age 76, both hemispheres 82.2
2410 Female, age 72, unknown 60.2
1942 Male, age 51, unknown 49.4
2223 Female, age 72, unknown 28.7
2021 Male, age 53, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 293.7
Min nTPM: 0.0
Std nTPM: 53.0
Median nTPM: 14.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 293.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 231.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 174.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 174.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 171.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 161.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 147.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 140.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 140.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 139.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 135.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.6
Pig sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 45.7
Sample C Male 8.0
Sample D Male 7.8
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 54.5
Min nTPM: 6.4
Sample B Female 7.5
Sample C Male 54.5
Sample D Male 6.4
Substantia nigra
nTPM: 111.6
Samples: 4

Max nTPM: 206.6
Min nTPM: 6.7
Sample A Female 160.8
Sample B Female 72.3
Sample C Male 206.6
Sample D Male 6.7
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 9.4
Min nTPM: 5.8
Sample A Female 8.2
Sample B Female 5.8
Sample C Male 9.4
Sample D Male 7.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 68.9
Min nTPM: 58.1
Sample A Male 58.6
Sample B Male 68.9
Sample C Female 58.1
Sample D Female 65.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
79591703 Antisense, RP_071218_02_B08, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.