MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.1 nTPM
HPA:97.1 nTPM
GTEx:106.5 nTPM
FANTOM5:172.6 Scaled Tags Per Million
Pig:136.5 nTPM
Mouse:139.9 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.3
2411 Female, age 72, unknown 97.8
2019 Male, age 18, unknown 97.3
1870 Female, age 42, unknown 94.9
1827 Male, age 72, unknown 91.3
2666 Male, age 74, left hemisphere 90.0
2828 Female, age 72, unknown 90.0
1833 Male, age 53, unknown 89.9
2219 Male, age 76, both hemispheres 87.7
1830 Male, age 51, unknown 87.4
2586 Male, age 75, left hemisphere 86.9
Dorsal raphe nucleus
nTPM: 97.1
2298 Female, age 72, unknown 104.8
1828 Male, age 53, unknown 97.0
2047 Male, age 72, unknown 95.9
2016 Female, age 72, unknown 94.2
2750 Male, age 76, both hemispheres 93.7
Inferior colliculus
nTPM: 93.9
2097 Female, age 72, unknown 100.8
1890 Male, age 53, unknown 95.1
1848 Female, age 42, unknown 93.2
2849 Male, age 72, unknown 86.3
Median raphe nucleus
nTPM: 91.4
2220 Male, age 76, midline 91.4
Pedunculopontine tegmental nucleus
nTPM: 93.0
1921 Female, age 85, both hemispheres 95.5
2334 Male, age 80, both hemispheres 94.6
2338 Male, age 61, both hemispheres 88.9
Periaquaductal grey, anterior
nTPM: 92.2
1947 Male, age 18, unknown 94.1
2502 Female, age 75, unknown 92.1
1795 Male, age 51, unknown 90.5
Periaquaductal grey, dorsal
nTPM: 91.2
1840 Male, age 53, unknown 92.4
2464 Female, age 72, unknown 92.1
1831 Male, age 72, unknown 90.4
2850 Male, age 76, both hemispheres 89.9
Periaquaductal grey, lateral
nTPM: 89.5
2272 Male, age 74, both hemispheres 92.5
2053 Male, age 18, unknown 89.0
2140 Male, age 76, both hemispheres 87.0
Pretectal area
nTPM: 94.2
1817 Female, age 42, unknown 98.7
2224 Female, age 72, unknown 97.4
2667 Female, age 75, unknown 97.1
1816 Male, age 51, unknown 97.0
2273 Male, age 74, both hemispheres 96.7
1944 Female, age 72, unknown 96.2
2007 Male, age 72, unknown 96.1
1815 Male, age 53, unknown 92.6
2316 Male, age 76, right hemisphere 91.3
2825 Male, age 18, unknown 88.7
2407 Male, age 75, both hemispheres 84.3
Red nucleus
nTPM: 93.3
1821 Female, age 72, unknown 104.6
1954 Female, age 42, unknown 96.4
2227 Male, age 72, unknown 94.9
1904 Male, age 53, unknown 94.5
2725 Female, age 75, unknown 94.4
2769 Male, age 72, unknown 94.2
2503 Female, age 72, unknown 94.0
2823 Male, age 76, right hemisphere 92.6
1865 Male, age 51, unknown 92.5
2785 Male, age 18, unknown 92.5
2588 Male, age 74, left hemisphere 87.1
2584 Male, age 75, left hemisphere 82.1
Substantia nigra
nTPM: 96.1
2241 Male, age 72, unknown 105.6
1916 Female, age 42, unknown 102.8
1851 Male, age 51, unknown 101.9
1889 Female, age 72, unknown 99.2
1941 Male, age 53, unknown 96.5
2409 Female, age 72, unknown 96.4
2699 Male, age 18, unknown 93.0
2590 Female, age 75, unknown 89.9
2665 Male, age 74, both hemispheres 88.2
2583 Male, age 75, right hemisphere 86.9
Superior colliculus
nTPM: 91.2
2587 Male, age 74, left hemisphere 95.4
1895 Male, age 76, right hemisphere 94.8
2087 Female, age 72, unknown 94.0
2668 Female, age 75, unknown 92.1
2261 Male, age 18, unknown 91.7
1839 Male, age 51, unknown 91.2
1796 Male, age 53, unknown 90.6
1913 Female, age 42, unknown 88.9
1995 Male, age 72, unknown 87.5
2664 Male, age 75, both hemispheres 85.9
Ventral tegmental area
nTPM: 95.2
2410 Female, age 72, unknown 101.7
1915 Female, age 42, unknown 98.8
2218 Male, age 76, both hemispheres 95.9
1942 Male, age 51, unknown 92.6
2021 Male, age 53, unknown 92.1
2223 Female, age 72, unknown 90.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.5
Samples: 139

Max nTPM: 172.9
Min nTPM: 57.4
Std nTPM: 20.3
Median nTPM: 104.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 172.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 164.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 156.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 154.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 152.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 152.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 149.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 142.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 137.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 136.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 136.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.6
FF:10158-103A5 76 years, female 172.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 136.5
Pig sample Sample description nTPM
Midbrain
nTPM: 121.9
Samples: 4

Max nTPM: 131.7
Min nTPM: 107.8
Sample A Female 131.7
Sample B Female 121.6
Sample C Male 126.3
Sample D Male 107.8
Periaqueductal gray
nTPM: 101.2
Samples: 3

Max nTPM: 116.7
Min nTPM: 87.4
Sample B Female 116.7
Sample C Male 99.6
Sample D Male 87.4
Substantia nigra
nTPM: 111.2
Samples: 4

Max nTPM: 163.4
Min nTPM: 73.6
Sample A Female 163.4
Sample B Female 109.9
Sample C Male 97.7
Sample D Male 73.6
Superior colliculi
nTPM: 136.6
Samples: 4

Max nTPM: 174.4
Min nTPM: 100.9
Sample A Female 174.4
Sample B Female 133.9
Sample C Male 137.0
Sample D Male 100.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.9
Samples: 4

Max nTPM: 142.9
Min nTPM: 137.2
Sample A Male 137.8
Sample B Male 137.2
Sample C Female 141.7
Sample D Female 142.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
70743842 Antisense, RP_050725_01_G04, Mouse strain C57BL/6J (56 days, male) 6.1
633302 Antisense, RP_040907_02_F10, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas project is funded
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