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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:92.4 nTPM
HPA:92.4 nTPM
GTEx:99.1 nTPM
FANTOM5:123.9 Scaled Tags Per Million
Pig:77.0 nTPM
Mouse:106.3 nTPM
Allen mouse:4.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 92.4
Sample id Sample description nTPM
Amygdala
nTPM: 92.4
2514 Male, age 75, right hemisphere 95.7
2814 Male, age 76, right hemisphere 93.5
2695 Female, age 67, right hemisphere 93.0
1987 Female, age 91, left hemisphere 92.1
2517 Female, age 94, left hemisphere 87.9
Basal amygdala
nTPM: 85.7
2609 Male, age 75, right hemisphere 91.3
2110 Male, age 80, left hemisphere 88.5
1955 Male, age 76, both hemispheres 87.4
2243 Female, age 91, right hemisphere 84.8
2685 Female, age 94, left hemisphere 83.8
2827 Female, age 67, right hemisphere 78.2
Central amygdala
nTPM: 88.5
1905 Male, age 76, both hemispheres 93.4
2515 Male, age 75, right hemisphere 93.0
2239 Male, age 80, left hemisphere 85.6
2826 Female, age 94, left hemisphere 85.6
2701 Female, age 91, right hemisphere 84.8
Corticomedial amygdala
nTPM: 86.6
2428 Male, age 75, right hemisphere 94.1
2829 Male, age 80, left hemisphere 90.5
2429 Female, age 94, left hemisphere 87.4
2240 Male, age 76, both hemispheres 85.5
2242 Female, age 91, right hemisphere 84.2
2535 Female, age 67, right hemisphere 77.7
Lateral amygdala
nTPM: 86.7
1883 Male, age 76, both hemispheres 93.7
2516 Male, age 75, right hemisphere 93.6
2534 Female, age 94, left hemisphere 88.4
2256 Male, age 80, left hemisphere 83.2
2255 Female, age 91, right hemisphere 82.2
2830 Female, age 67, right hemisphere 79.2
Stria terminalis, bed nucleus
nTPM: 88.8
1974 Female, age 91, both hemispheres 92.3
2486 Female, age 94, both hemispheres 87.4
2201 Male, age 74, unknown 86.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.1
Samples: 152

Max nTPM: 221.1
Min nTPM: 41.5
Std nTPM: 26.4
Median nTPM: 95.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 221.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 180.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 180.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 164.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 155.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 148.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 145.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 143.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 143.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 143.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 141.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 138.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 137.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 136.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 130.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 128.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 125.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 123.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 123.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 121.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 119.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 118.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 117.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 116.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 114.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 113.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 113.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 111.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 111.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 110.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 110.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 108.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 107.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 107.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 106.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 106.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 106.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 105.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 104.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 104.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 103.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 102.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 100.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 100.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 100.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 99.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 98.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 98.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 97.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 96.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 95.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 95.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 94.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 93.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 93.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 92.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 91.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 91.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 89.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 89.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 88.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 88.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 88.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 88.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 87.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 87.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 86.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 84.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 83.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 82.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 81.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 80.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 79.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 79.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 79.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 78.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 75.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 74.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 73.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 72.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 72.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 71.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 71.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 71.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 67.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 67.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 65.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 65.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 65.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 64.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 63.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 52.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 49.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 41.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 123.9
FF:10151-102I7 76 years, female 123.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 77.0
Pig sample Sample description nTPM
Amygdala
nTPM: 77.0
Samples: 4

Max nTPM: 110.4
Min nTPM: 58.8
Sample A Female 110.4
Sample B Female 79.7
Sample C Male 58.8
Sample D Male 59.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 106.3
Samples: 4

Max nTPM: 107.5
Min nTPM: 105.4
Sample A Male 106.2
Sample B Male 105.4
Sample C Female 107.5
Sample D Female 105.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
70743842 Antisense, RP_050725_01_G04, Mouse strain C57BL/6J (56 days, male) 7.7
633302 Antisense, RP_040907_02_F10, Mouse strain C57BL/6J (56 days, male) 1.7

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