MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.1 nTPM
HPA:128.1 nTPM
GTEx:159.9 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:97.7 nTPM
Mouse:450.0 nTPM
Allen mouse:14.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.9
2019 Male, age 18, unknown 131.0
2411 Female, age 72, unknown 126.1
1827 Male, age 72, unknown 121.7
2666 Male, age 74, left hemisphere 116.9
1870 Female, age 42, unknown 115.0
2219 Male, age 76, both hemispheres 113.9
1833 Male, age 53, unknown 112.2
2586 Male, age 75, left hemisphere 111.8
2828 Female, age 72, unknown 111.2
1830 Male, age 51, unknown 109.5
Dorsal raphe nucleus
nTPM: 123.0
2298 Female, age 72, unknown 134.2
1828 Male, age 53, unknown 127.1
2047 Male, age 72, unknown 126.8
2750 Male, age 76, both hemispheres 116.7
2016 Female, age 72, unknown 110.0
Inferior colliculus
nTPM: 119.7
2097 Female, age 72, unknown 131.3
1890 Male, age 53, unknown 121.8
1848 Female, age 42, unknown 118.4
2849 Male, age 72, unknown 107.3
Median raphe nucleus
nTPM: 118.7
2220 Male, age 76, midline 118.7
Pedunculopontine tegmental nucleus
nTPM: 120.5
1921 Female, age 85, both hemispheres 127.8
2334 Male, age 80, both hemispheres 121.6
2338 Male, age 61, both hemispheres 112.1
Periaquaductal grey, anterior
nTPM: 117.6
1947 Male, age 18, unknown 122.7
2502 Female, age 75, unknown 116.3
1795 Male, age 51, unknown 113.9
Periaquaductal grey, dorsal
nTPM: 111.2
1840 Male, age 53, unknown 112.7
2464 Female, age 72, unknown 112.0
1831 Male, age 72, unknown 111.0
2850 Male, age 76, both hemispheres 109.1
Periaquaductal grey, lateral
nTPM: 109.0
2272 Male, age 74, both hemispheres 114.7
2053 Male, age 18, unknown 107.7
2140 Male, age 76, both hemispheres 104.5
Pretectal area
nTPM: 124.4
1817 Female, age 42, unknown 141.2
2007 Male, age 72, unknown 138.9
1816 Male, age 51, unknown 138.1
1944 Female, age 72, unknown 138.1
2667 Female, age 75, unknown 132.5
1815 Male, age 53, unknown 123.8
2273 Male, age 74, both hemispheres 119.2
2224 Female, age 72, unknown 118.4
2825 Male, age 18, unknown 107.8
2316 Male, age 76, right hemisphere 105.7
2407 Male, age 75, both hemispheres 104.3
Red nucleus
nTPM: 116.0
1821 Female, age 72, unknown 139.0
2785 Male, age 18, unknown 121.6
1954 Female, age 42, unknown 117.0
2823 Male, age 76, right hemisphere 116.0
2725 Female, age 75, unknown 115.1
1865 Male, age 51, unknown 114.8
2503 Female, age 72, unknown 113.8
2769 Male, age 72, unknown 113.1
1904 Male, age 53, unknown 112.4
2227 Male, age 72, unknown 112.2
2588 Male, age 74, left hemisphere 110.3
2584 Male, age 75, left hemisphere 107.1
Substantia nigra
nTPM: 128.1
1916 Female, age 42, unknown 146.8
2241 Male, age 72, unknown 139.4
1889 Female, age 72, unknown 139.2
1851 Male, age 51, unknown 135.9
1941 Male, age 53, unknown 135.6
2409 Female, age 72, unknown 127.0
2665 Male, age 74, both hemispheres 118.3
2699 Male, age 18, unknown 116.6
2590 Female, age 75, unknown 112.8
2583 Male, age 75, right hemisphere 109.1
Superior colliculus
nTPM: 115.1
2087 Female, age 72, unknown 127.7
2668 Female, age 75, unknown 121.1
1895 Male, age 76, right hemisphere 120.1
2587 Male, age 74, left hemisphere 119.5
2261 Male, age 18, unknown 116.9
1796 Male, age 53, unknown 115.1
1839 Male, age 51, unknown 111.8
2664 Male, age 75, both hemispheres 108.5
1913 Female, age 42, unknown 106.0
1995 Male, age 72, unknown 104.7
Ventral tegmental area
nTPM: 120.7
2410 Female, age 72, unknown 132.1
1915 Female, age 42, unknown 129.9
2218 Male, age 76, both hemispheres 124.1
1942 Male, age 51, unknown 115.8
2223 Female, age 72, unknown 111.4
2021 Male, age 53, unknown 110.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.9
Samples: 139

Max nTPM: 410.0
Min nTPM: 64.7
Std nTPM: 59.8
Median nTPM: 145.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 410.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 394.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 360.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 328.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 282.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 278.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 257.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 250.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 242.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 241.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 236.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.2
FF:10158-103A5 76 years, female 92.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.7
Pig sample Sample description nTPM
Midbrain
nTPM: 87.1
Samples: 4

Max nTPM: 98.1
Min nTPM: 72.7
Sample A Female 72.7
Sample B Female 82.1
Sample C Male 95.6
Sample D Male 98.1
Periaqueductal gray
nTPM: 79.9
Samples: 3

Max nTPM: 94.2
Min nTPM: 72.3
Sample B Female 72.3
Sample C Male 94.2
Sample D Male 73.1
Substantia nigra
nTPM: 90.2
Samples: 4

Max nTPM: 132.5
Min nTPM: 48.6
Sample A Female 132.5
Sample B Female 73.7
Sample C Male 106.0
Sample D Male 48.6
Superior colliculi
nTPM: 97.7
Samples: 4

Max nTPM: 117.9
Min nTPM: 77.8
Sample A Female 117.9
Sample B Female 77.8
Sample C Male 104.0
Sample D Male 90.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 450.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 450.0
Samples: 4

Max nTPM: 467.7
Min nTPM: 430.0
Sample A Male 430.0
Sample B Male 460.0
Sample C Female 467.7
Sample D Female 442.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
1207 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 14.6
1208 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 12.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.