MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1686.1 nTPM
HPA:1686.1 nTPM
GTEx:2148.7 nTPM
FANTOM5:862.8 Scaled Tags Per Million
Pig:601.4 nTPM
Mouse:1336.8 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1686.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1594.0
2586 Male, age 75, left hemisphere 1814.6
2828 Female, age 72, unknown 1738.7
2219 Male, age 76, both hemispheres 1600.6
1827 Male, age 72, unknown 1577.9
2666 Male, age 74, left hemisphere 1560.5
2411 Female, age 72, unknown 1559.9
1870 Female, age 42, unknown 1558.2
1833 Male, age 53, unknown 1554.2
1830 Male, age 51, unknown 1521.9
2019 Male, age 18, unknown 1454.0
Dorsal raphe nucleus
nTPM: 1677.3
2016 Female, age 72, unknown 1803.0
1828 Male, age 53, unknown 1717.5
2047 Male, age 72, unknown 1678.7
2298 Female, age 72, unknown 1618.1
2750 Male, age 76, both hemispheres 1569.4
Inferior colliculus
nTPM: 1654.2
1890 Male, age 53, unknown 1697.4
2849 Male, age 72, unknown 1680.9
1848 Female, age 42, unknown 1671.9
2097 Female, age 72, unknown 1566.4
Median raphe nucleus
nTPM: 1525.2
2220 Male, age 76, midline 1525.2
Pedunculopontine tegmental nucleus
nTPM: 1508.8
1921 Female, age 85, both hemispheres 1662.3
2334 Male, age 80, both hemispheres 1555.9
2338 Male, age 61, both hemispheres 1308.2
Periaquaductal grey, anterior
nTPM: 1610.8
1795 Male, age 51, unknown 1625.1
2502 Female, age 75, unknown 1616.3
1947 Male, age 18, unknown 1591.1
Periaquaductal grey, dorsal
nTPM: 1686.1
1840 Male, age 53, unknown 1810.6
2850 Male, age 76, both hemispheres 1737.2
2464 Female, age 72, unknown 1665.1
1831 Male, age 72, unknown 1531.7
Periaquaductal grey, lateral
nTPM: 1599.0
2053 Male, age 18, unknown 1686.9
2140 Male, age 76, both hemispheres 1648.4
2272 Male, age 74, both hemispheres 1461.8
Pretectal area
nTPM: 1622.9
2667 Female, age 75, unknown 1730.0
2316 Male, age 76, right hemisphere 1676.2
1817 Female, age 42, unknown 1674.3
2825 Male, age 18, unknown 1653.7
1815 Male, age 53, unknown 1643.3
1944 Female, age 72, unknown 1630.8
1816 Male, age 51, unknown 1612.6
2224 Female, age 72, unknown 1596.4
2407 Male, age 75, both hemispheres 1561.6
2273 Male, age 74, both hemispheres 1550.3
2007 Male, age 72, unknown 1523.2
Red nucleus
nTPM: 1655.7
2503 Female, age 72, unknown 1784.4
2769 Male, age 72, unknown 1765.2
2227 Male, age 72, unknown 1748.3
1904 Male, age 53, unknown 1695.2
1821 Female, age 72, unknown 1686.7
2588 Male, age 74, left hemisphere 1675.0
1954 Female, age 42, unknown 1674.6
2823 Male, age 76, right hemisphere 1648.9
1865 Male, age 51, unknown 1644.2
2725 Female, age 75, unknown 1531.8
2584 Male, age 75, left hemisphere 1525.2
2785 Male, age 18, unknown 1488.7
Substantia nigra
nTPM: 1671.7
2699 Male, age 18, unknown 2026.0
2665 Male, age 74, both hemispheres 1737.7
1851 Male, age 51, unknown 1711.0
1916 Female, age 42, unknown 1680.6
1889 Female, age 72, unknown 1648.8
2241 Male, age 72, unknown 1630.5
2583 Male, age 75, right hemisphere 1623.8
2409 Female, age 72, unknown 1616.5
2590 Female, age 75, unknown 1580.8
1941 Male, age 53, unknown 1461.2
Superior colliculus
nTPM: 1635.2
2668 Female, age 75, unknown 1738.2
1995 Male, age 72, unknown 1707.1
2664 Male, age 75, both hemispheres 1663.2
2087 Female, age 72, unknown 1630.9
1839 Male, age 51, unknown 1623.2
1796 Male, age 53, unknown 1619.8
1895 Male, age 76, right hemisphere 1605.1
2261 Male, age 18, unknown 1600.5
1913 Female, age 42, unknown 1595.5
2587 Male, age 74, left hemisphere 1568.4
Ventral tegmental area
nTPM: 1591.1
2410 Female, age 72, unknown 1681.0
1915 Female, age 42, unknown 1633.6
1942 Male, age 51, unknown 1614.4
2021 Male, age 53, unknown 1599.9
2218 Male, age 76, both hemispheres 1557.3
2223 Female, age 72, unknown 1460.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2148.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2148.7
Samples: 139

Max nTPM: 4652.2
Min nTPM: 442.8
Std nTPM: 884.6
Median nTPM: 2034.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4652.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4316.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 4238.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4216.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 4142.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 3993.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 3978.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3677.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 3661.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3627.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 3613.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 862.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 862.8
FF:10158-103A5 76 years, female 862.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 601.4
Pig sample Sample description nTPM
Midbrain
nTPM: 589.5
Samples: 4

Max nTPM: 748.0
Min nTPM: 460.1
Sample A Female 594.6
Sample B Female 748.0
Sample C Male 555.4
Sample D Male 460.1
Periaqueductal gray
nTPM: 601.3
Samples: 3

Max nTPM: 691.6
Min nTPM: 501.6
Sample B Female 691.6
Sample C Male 610.8
Sample D Male 501.6
Substantia nigra
nTPM: 594.2
Samples: 4

Max nTPM: 710.8
Min nTPM: 479.2
Sample A Female 710.8
Sample B Female 479.2
Sample C Male 574.4
Sample D Male 612.2
Superior colliculi
nTPM: 568.7
Samples: 4

Max nTPM: 768.5
Min nTPM: 360.3
Sample A Female 768.5
Sample B Female 360.3
Sample C Male 562.7
Sample D Male 583.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1336.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1336.8
Samples: 4

Max nTPM: 1413.0
Min nTPM: 1242.4
Sample A Male 1413.0
Sample B Male 1242.4
Sample C Female 1291.8
Sample D Female 1400.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
79568051 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 15.5
79912570 Antisense, RP_071204_02_C04, Mouse strain C57BL/6J (56 days, male) 11.3
1238 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 10.3
1237 Antisense, RP_Baylor_103165, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.