MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA:12.2 nTPM
GTEx:25.3 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:74.1 nTPM
Mouse:73.3 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.2
2019 Male, age 18, unknown 25.9
2219 Male, age 76, both hemispheres 5.6
2411 Female, age 72, unknown 0.9
1827 Male, age 72, unknown 0.0
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2666 Male, age 74, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 1.7
2298 Female, age 72, unknown 4.4
1828 Male, age 53, unknown 4.3
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 2.1
2097 Female, age 72, unknown 6.9
1890 Male, age 53, unknown 1.8
1848 Female, age 42, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 2.9
1921 Female, age 85, both hemispheres 5.4
2334 Male, age 80, both hemispheres 3.2
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.3
2502 Female, age 75, unknown 1.1
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 1.3
2272 Male, age 74, both hemispheres 4.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 12.2
2007 Male, age 72, unknown 30.9
1817 Female, age 42, unknown 30.0
1944 Female, age 72, unknown 29.7
1816 Male, age 51, unknown 24.6
1815 Male, age 53, unknown 17.1
2273 Male, age 74, both hemispheres 2.2
2224 Female, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 2.3
2785 Male, age 18, unknown 20.1
1821 Female, age 72, unknown 5.6
2725 Female, age 75, unknown 2.7
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 9.7
1889 Female, age 72, unknown 23.9
1916 Female, age 42, unknown 20.1
1941 Male, age 53, unknown 15.6
1851 Male, age 51, unknown 13.9
2665 Male, age 74, both hemispheres 11.4
2241 Male, age 72, unknown 8.2
2590 Female, age 75, unknown 4.5
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 2.4
2087 Female, age 72, unknown 15.2
2668 Female, age 75, unknown 5.6
1895 Male, age 76, right hemisphere 1.4
2261 Male, age 18, unknown 1.0
2664 Male, age 75, both hemispheres 1.0
1796 Male, age 53, unknown 0.0
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
Ventral tegmental area
nTPM: 6.8
2410 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 15.8
1915 Female, age 42, unknown 4.9
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.3
Samples: 139

Max nTPM: 95.1
Min nTPM: 7.8
Std nTPM: 15.6
Median nTPM: 20.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 95.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 94.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 62.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 59.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 50.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 46.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 46.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 46.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.1
Pig sample Sample description nTPM
Midbrain
nTPM: 48.7
Samples: 4

Max nTPM: 105.2
Min nTPM: 9.4
Sample A Female 9.4
Sample B Female 26.5
Sample C Male 105.2
Sample D Male 53.7
Periaqueductal gray
nTPM: 24.4
Samples: 3

Max nTPM: 30.1
Min nTPM: 20.5
Sample B Female 22.7
Sample C Male 30.1
Sample D Male 20.5
Substantia nigra
nTPM: 39.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 13.1
Sample A Female 59.3
Sample B Female 30.6
Sample C Male 54.2
Sample D Male 13.1
Superior colliculi
nTPM: 74.1
Samples: 4

Max nTPM: 146.5
Min nTPM: 30.8
Sample A Female 55.3
Sample B Female 30.8
Sample C Male 146.5
Sample D Male 63.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 73.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 81.1
Min nTPM: 64.7
Sample A Male 64.7
Sample B Male 73.5
Sample C Female 81.1
Sample D Female 74.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
378546 Antisense, RP_040625_01_A11, Mouse strain C57BL/6J (56 days, male) 5.2
74047899 Antisense, RP_051214_02_B09, Mouse strain C57BL/6J (56 days, male) 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.