MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.1 nTPM
HPA:17.1 nTPM
GTEx:20.8 nTPM
FANTOM5:10.3 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:5.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2586 Male, age 75, left hemisphere 23.4
2828 Female, age 72, unknown 18.2
2019 Male, age 18, unknown 17.2
1827 Male, age 72, unknown 16.5
1833 Male, age 53, unknown 15.2
2411 Female, age 72, unknown 15.2
2666 Male, age 74, left hemisphere 15.2
1830 Male, age 51, unknown 14.7
1870 Female, age 42, unknown 14.1
2219 Male, age 76, both hemispheres 12.6
Dorsal raphe nucleus
nTPM: 16.2
1828 Male, age 53, unknown 17.0
2298 Female, age 72, unknown 16.8
2016 Female, age 72, unknown 16.6
2047 Male, age 72, unknown 16.4
2750 Male, age 76, both hemispheres 14.4
Inferior colliculus
nTPM: 15.6
1848 Female, age 42, unknown 16.3
1890 Male, age 53, unknown 16.0
2849 Male, age 72, unknown 15.4
2097 Female, age 72, unknown 14.7
Median raphe nucleus
nTPM: 12.9
2220 Male, age 76, midline 12.9
Pedunculopontine tegmental nucleus
nTPM: 14.8
2338 Male, age 61, both hemispheres 16.0
2334 Male, age 80, both hemispheres 14.4
1921 Female, age 85, both hemispheres 14.0
Periaquaductal grey, anterior
nTPM: 16.6
1795 Male, age 51, unknown 17.8
2502 Female, age 75, unknown 17.6
1947 Male, age 18, unknown 14.5
Periaquaductal grey, dorsal
nTPM: 15.8
2464 Female, age 72, unknown 16.4
2850 Male, age 76, both hemispheres 16.2
1840 Male, age 53, unknown 15.6
1831 Male, age 72, unknown 14.9
Periaquaductal grey, lateral
nTPM: 16.0
2140 Male, age 76, both hemispheres 17.1
2272 Male, age 74, both hemispheres 15.7
2053 Male, age 18, unknown 15.1
Pretectal area
nTPM: 16.4
1817 Female, age 42, unknown 18.4
2007 Male, age 72, unknown 17.6
1816 Male, age 51, unknown 17.4
1944 Female, age 72, unknown 17.0
1815 Male, age 53, unknown 16.6
2407 Male, age 75, both hemispheres 16.2
2667 Female, age 75, unknown 16.2
2316 Male, age 76, right hemisphere 16.0
2273 Male, age 74, both hemispheres 15.6
2825 Male, age 18, unknown 15.3
2224 Female, age 72, unknown 13.5
Red nucleus
nTPM: 17.1
2785 Male, age 18, unknown 19.0
2769 Male, age 72, unknown 18.4
2227 Male, age 72, unknown 18.3
1954 Female, age 42, unknown 18.0
1904 Male, age 53, unknown 17.0
2584 Male, age 75, left hemisphere 17.0
2503 Female, age 72, unknown 16.9
2823 Male, age 76, right hemisphere 16.7
1865 Male, age 51, unknown 16.2
1821 Female, age 72, unknown 16.1
2725 Female, age 75, unknown 15.9
2588 Male, age 74, left hemisphere 15.4
Substantia nigra
nTPM: 15.1
2583 Male, age 75, right hemisphere 17.2
1916 Female, age 42, unknown 16.3
1889 Female, age 72, unknown 15.8
2665 Male, age 74, both hemispheres 15.7
1851 Male, age 51, unknown 15.6
2699 Male, age 18, unknown 15.4
1941 Male, age 53, unknown 14.7
2590 Female, age 75, unknown 14.7
2409 Female, age 72, unknown 12.8
2241 Male, age 72, unknown 12.4
Superior colliculus
nTPM: 16.2
2664 Male, age 75, both hemispheres 19.3
2261 Male, age 18, unknown 16.7
1796 Male, age 53, unknown 16.6
2087 Female, age 72, unknown 16.6
2668 Female, age 75, unknown 16.6
1995 Male, age 72, unknown 16.3
1839 Male, age 51, unknown 15.5
2587 Male, age 74, left hemisphere 15.3
1895 Male, age 76, right hemisphere 14.5
1913 Female, age 42, unknown 14.3
Ventral tegmental area
nTPM: 14.7
2410 Female, age 72, unknown 15.8
1915 Female, age 42, unknown 15.3
1942 Male, age 51, unknown 14.5
2223 Female, age 72, unknown 14.5
2218 Male, age 76, both hemispheres 14.4
2021 Male, age 53, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.8
Samples: 139

Max nTPM: 50.2
Min nTPM: 9.5
Std nTPM: 7.7
Median nTPM: 19.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 50.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 47.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 39.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 38.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 36.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 33.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 32.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 31.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.3
FF:10158-103A5 76 years, female 10.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 9.9
Min nTPM: 4.4
Sample A Female 8.5
Sample B Female 5.6
Sample C Male 9.9
Sample D Male 4.4
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.1
Min nTPM: 4.6
Sample B Female 4.8
Sample C Male 5.1
Sample D Male 4.6
Substantia nigra
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.2
Sample A Female 7.1
Sample B Female 5.3
Sample C Male 6.6
Sample D Male 5.2
Superior colliculi
nTPM: 7.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.6
Sample A Female 7.0
Sample B Female 7.1
Sample C Male 9.6
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.2
Sample A Male 6.1
Sample B Male 5.2
Sample C Female 4.2
Sample D Female 5.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71654133 Antisense, RP_050927_03_D07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.