MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA:21.1 nTPM
GTEx:27.7 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:23.5 nTPM
Mouse:70.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
2019 Male, age 18, unknown 22.3
2586 Male, age 75, left hemisphere 19.7
2411 Female, age 72, unknown 19.5
1827 Male, age 72, unknown 19.3
1870 Female, age 42, unknown 19.2
2828 Female, age 72, unknown 18.5
1830 Male, age 51, unknown 18.4
2666 Male, age 74, left hemisphere 18.4
1833 Male, age 53, unknown 18.1
2219 Male, age 76, both hemispheres 18.1
Dorsal raphe nucleus
nTPM: 21.0
2298 Female, age 72, unknown 22.5
2047 Male, age 72, unknown 21.7
1828 Male, age 53, unknown 21.5
2750 Male, age 76, both hemispheres 19.8
2016 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 19.7
2097 Female, age 72, unknown 21.7
1890 Male, age 53, unknown 20.1
1848 Female, age 42, unknown 19.2
2849 Male, age 72, unknown 17.8
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Pedunculopontine tegmental nucleus
nTPM: 19.2
1921 Female, age 85, both hemispheres 19.8
2334 Male, age 80, both hemispheres 19.4
2338 Male, age 61, both hemispheres 18.3
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 22.3
1795 Male, age 51, unknown 21.2
1947 Male, age 18, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 19.5
1840 Male, age 53, unknown 20.4
2850 Male, age 76, both hemispheres 19.8
2464 Female, age 72, unknown 19.0
1831 Male, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 19.7
2272 Male, age 74, both hemispheres 20.4
2140 Male, age 76, both hemispheres 20.3
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 20.4
2007 Male, age 72, unknown 22.3
2667 Female, age 75, unknown 21.3
1817 Female, age 42, unknown 21.2
2273 Male, age 74, both hemispheres 21.1
1944 Female, age 72, unknown 21.0
1816 Male, age 51, unknown 20.9
2224 Female, age 72, unknown 20.7
1815 Male, age 53, unknown 19.7
2316 Male, age 76, right hemisphere 19.7
2407 Male, age 75, both hemispheres 18.4
2825 Male, age 18, unknown 18.3
Red nucleus
nTPM: 19.6
2785 Male, age 18, unknown 21.5
1821 Female, age 72, unknown 21.3
2769 Male, age 72, unknown 19.9
2227 Male, age 72, unknown 19.8
2823 Male, age 76, right hemisphere 19.8
2503 Female, age 72, unknown 19.6
1904 Male, age 53, unknown 19.5
1954 Female, age 42, unknown 19.2
1865 Male, age 51, unknown 18.8
2588 Male, age 74, left hemisphere 18.8
2584 Male, age 75, left hemisphere 18.5
2725 Female, age 75, unknown 18.4
Substantia nigra
nTPM: 20.1
1851 Male, age 51, unknown 22.1
1916 Female, age 42, unknown 22.1
1941 Male, age 53, unknown 21.1
2241 Male, age 72, unknown 20.1
1889 Female, age 72, unknown 19.7
2409 Female, age 72, unknown 19.5
2590 Female, age 75, unknown 19.5
2665 Male, age 74, both hemispheres 19.3
2583 Male, age 75, right hemisphere 19.2
2699 Male, age 18, unknown 18.6
Superior colliculus
nTPM: 19.6
2261 Male, age 18, unknown 21.1
2087 Female, age 72, unknown 21.0
1796 Male, age 53, unknown 19.8
2664 Male, age 75, both hemispheres 19.8
2668 Female, age 75, unknown 19.5
1995 Male, age 72, unknown 19.4
1895 Male, age 76, right hemisphere 19.3
1913 Female, age 42, unknown 19.2
2587 Male, age 74, left hemisphere 18.8
1839 Male, age 51, unknown 18.5
Ventral tegmental area
nTPM: 20.3
2410 Female, age 72, unknown 21.6
1942 Male, age 51, unknown 20.8
1915 Female, age 42, unknown 20.3
2218 Male, age 76, both hemispheres 20.3
2223 Female, age 72, unknown 20.0
2021 Male, age 53, unknown 19.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.7
Samples: 139

Max nTPM: 60.3
Min nTPM: 13.1
Std nTPM: 8.1
Median nTPM: 26.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 60.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 42.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 42.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 41.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 41.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 41.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.5
Pig sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 23.3
Sample C Male 25.3
Sample D Male 26.9
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 22.7
Min nTPM: 15.9
Sample B Female 21.4
Sample C Male 22.7
Sample D Male 15.9
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 13.6
Sample A Female 24.6
Sample B Female 19.6
Sample C Male 22.0
Sample D Male 13.6
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 26.3
Min nTPM: 20.0
Sample A Female 26.3
Sample B Female 20.0
Sample C Male 25.2
Sample D Male 22.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.4
Samples: 4

Max nTPM: 76.9
Min nTPM: 61.8
Sample A Male 76.9
Sample B Male 70.3
Sample C Female 61.8
Sample D Female 72.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74581032 Antisense, RP_060215_02_D08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.