BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.4 nTPM
HPA:43.4 nTPM
GTEx:53.0 nTPM
FANTOM5:44.2 Scaled Tags Per Million
Pig:37.9 nTPM
Mouse:78.5 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA058363Antibody HPA059577
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.3
1781 Male, age 74, unknown 28.8
2288 Male, age 75, left hemisphere 20.7
2481 Female, age 94, left hemisphere 19.9
1854 Male, age 80, left hemisphere 19.3
2289 Male, age 61, right hemisphere 19.0
1857 Female, age 85, left hemisphere 18.8
2290 Female, age 72, unknown 18.0
2846 Female, age 79, unknown 17.7
Claustrum
nTPM: 24.5
2491 Male, age 75, both hemispheres 36.8
2284 Female, age 91, both hemispheres 31.8
2198 Male, age 80, both hemispheres 31.1
2568 Male, age 61, both hemispheres 26.7
2645 Female, age 72, unknown 24.8
1956 Male, age 74, unknown 21.9
2196 Female, age 79, unknown 17.6
2392 Female, age 94, both hemispheres 16.7
2292 Female, age 85, both hemispheres 13.2
Globus pallidus, externus
nTPM: 11.2
2567 Female, age 72, unknown 16.2
2395 Male, age 75, both hemispheres 12.4
2646 Male, age 61, right hemisphere 11.8
2772 Female, age 79, unknown 11.8
1996 Male, age 80, right hemisphere 3.6
Globus pallidus, internus
nTPM: 8.8
2483 Female, age 94, right hemisphere 21.7
2566 Female, age 72, unknown 11.5
2287 Male, age 75, right hemisphere 8.9
1818 Male, age 74, unknown 8.3
2111 Female, age 85, right hemisphere 3.9
2778 Female, age 91, both hemispheres 3.9
2037 Male, age 80, right hemisphere 3.4
Nucleus accumbens
nTPM: 18.6
1783 Male, age 74, unknown 27.4
1856 Female, age 91, right hemisphere 26.1
2824 Male, age 61, right hemisphere 24.5
1806 Female, age 85, left hemisphere 19.2
2286 Male, age 75, left hemisphere 18.1
2732 Male, age 80, right hemisphere 13.0
2391 Female, age 94, left hemisphere 11.9
2698 Female, age 72, unknown 8.5
Nucleus basalis of Meynert
nTPM: 16.2
2484 Female, age 94, left hemisphere 22.8
2569 Male, age 61, both hemispheres 17.7
2393 Male, age 80, right hemisphere 16.2
2821 Male, age 75, both hemispheres 8.1
Nucleus of the diagonal band
nTPM: 43.4
2195 Female, age 85, both hemispheres 53.9
2775 Male, age 80, right hemisphere 50.6
2029 Male, age 61, right hemisphere 46.2
1812 Female, age 91, both hemispheres 43.7
1979 Male, age 74, unknown 22.6
Olfactory tubercle
nTPM: 41.3
1998 Female, age 91, both hemispheres 46.8
2487 Female, age 94, left hemisphere 46.3
1846 Male, age 80, right hemisphere 38.4
2856 Male, age 75, right hemisphere 33.5
Putamen
nTPM: 19.8
2647 Male, age 75, left hemisphere 24.0
1937 Female, age 91, right hemisphere 23.1
2466 Female, age 79, unknown 20.7
1838 Male, age 80, right hemisphere 20.3
2489 Female, age 72, unknown 18.7
2482 Female, age 94, left hemisphere 16.3
1829 Male, age 74, unknown 15.9
Septal nuclei
nTPM: 41.2
1960 Male, age 74, unknown 74.7
2059 Female, age 85, both hemispheres 46.9
2031 Female, age 72, unknown 44.2
2629 Female, age 94, right hemisphere 41.3
2009 Female, age 91, both hemispheres 40.4
2394 Male, age 61, left hemisphere 26.3
2199 Male, age 80, right hemisphere 14.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.0
Samples: 246

Max nTPM: 99.5
Min nTPM: 17.3
Std nTPM: 14.3
Median nTPM: 41.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 99.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 98.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 76.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 75.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 75.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 71.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 71.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 70.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 70.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 69.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.0
Samples: 246

Max nTPM: 88.6
Min nTPM: 18.7
Std nTPM: 16.2
Median nTPM: 55.1
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 88.6
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 87.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 86.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 84.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 84.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 83.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 81.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 81.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 79.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 78.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 78.0
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Brain - Putamen (basal ganglia)
Average nTPM: 42.3
Samples: 205

Max nTPM: 76.8
Min nTPM: 16.5
Std nTPM: 13.2
Median nTPM: 40.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 76.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 74.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 72.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 72.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 70.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 70.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 69.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 66.2
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 65.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 64.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 64.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.7
FF:10164-103B2 76 years, female 31.7
Globus pallidus
Scaled Tags Per Million: 19.5
FF:10161-103A8 76 years, female 20.9
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 44.2
FF:10037-101F1 23-56 years, mixed 44.2
Putamen
Scaled Tags Per Million: 36.7
FF:10176-103C5 60 years, female 36.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.9
Pig sample Sample description nTPM
Caudate
nTPM: 38.0
Samples: 4

Max nTPM: 44.8
Min nTPM: 31.5
Sample A Female 31.5
Sample B Female 38.3
Sample C Male 44.8
Sample D Male 37.2
Putamen
nTPM: 35.9
Samples: 4

Max nTPM: 42.8
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 39.4
Sample C Male 42.8
Sample D Male 38.7
Septum
nTPM: 28.3
Samples: 4

Max nTPM: 34.0
Min nTPM: 16.7
Sample A Female 33.5
Sample B Female 34.0
Sample C Male 29.1
Sample D Male 16.7
Ventral pallidum
nTPM: 33.1
Samples: 4

Max nTPM: 34.5
Min nTPM: 30.4
Sample A Female 34.0
Sample B Female 34.5
Sample C Male 33.5
Sample D Male 30.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.7
Samples: 4

Max nTPM: 68.9
Min nTPM: 59.6
Sample A Male 59.6
Sample B Male 62.9
Sample C Female 68.9
Sample D Female 67.3
Septum
nTPM: 57.9
Samples: 4

Max nTPM: 72.1
Min nTPM: 47.2
Sample A Male 72.1
Sample B Male 54.5
Sample C Female 57.7
Sample D Female 47.2
Ventral forebrain
nTPM: 78.5
Samples: 4

Max nTPM: 82.9
Min nTPM: 73.8
Sample A Male 82.9
Sample B Male 73.8
Sample C Female 74.9
Sample D Female 82.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
72004450 Antisense, RP_050915_02_H05, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.0
72004450 Antisense, RP_050915_02_H05, Mouse strain C57BL/6J (56 days, male) 1.0

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