MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.7 nTPM
HPA:29.7 nTPM
GTEx:29.2 nTPM
FANTOM5:20.4 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:15.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.4
2586 Male, age 75, left hemisphere 35.3
2019 Male, age 18, unknown 33.3
2828 Female, age 72, unknown 31.3
2666 Male, age 74, left hemisphere 28.9
2411 Female, age 72, unknown 28.8
1827 Male, age 72, unknown 28.1
1833 Male, age 53, unknown 27.3
2219 Male, age 76, both hemispheres 27.2
1830 Male, age 51, unknown 26.9
1870 Female, age 42, unknown 26.6
Dorsal raphe nucleus
nTPM: 26.7
1828 Male, age 53, unknown 29.7
2047 Male, age 72, unknown 27.9
2016 Female, age 72, unknown 25.7
2750 Male, age 76, both hemispheres 25.4
2298 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 27.9
1890 Male, age 53, unknown 29.5
2097 Female, age 72, unknown 29.0
1848 Female, age 42, unknown 27.4
2849 Male, age 72, unknown 25.9
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Pedunculopontine tegmental nucleus
nTPM: 26.0
1921 Female, age 85, both hemispheres 27.1
2334 Male, age 80, both hemispheres 25.8
2338 Male, age 61, both hemispheres 25.0
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 28.9
1795 Male, age 51, unknown 26.6
1947 Male, age 18, unknown 25.6
Periaquaductal grey, dorsal
nTPM: 25.8
2464 Female, age 72, unknown 28.2
1831 Male, age 72, unknown 26.0
1840 Male, age 53, unknown 25.3
2850 Male, age 76, both hemispheres 23.5
Periaquaductal grey, lateral
nTPM: 25.7
2140 Male, age 76, both hemispheres 27.0
2053 Male, age 18, unknown 25.6
2272 Male, age 74, both hemispheres 24.5
Pretectal area
nTPM: 29.7
2007 Male, age 72, unknown 34.3
1817 Female, age 42, unknown 33.6
1816 Male, age 51, unknown 33.1
2316 Male, age 76, right hemisphere 32.5
1944 Female, age 72, unknown 32.2
1815 Male, age 53, unknown 30.8
2667 Female, age 75, unknown 30.6
2407 Male, age 75, both hemispheres 28.1
2273 Male, age 74, both hemispheres 24.6
2825 Male, age 18, unknown 24.3
2224 Female, age 72, unknown 22.8
Red nucleus
nTPM: 29.4
2785 Male, age 18, unknown 34.9
2588 Male, age 74, left hemisphere 32.8
2584 Male, age 75, left hemisphere 30.4
2769 Male, age 72, unknown 30.2
2227 Male, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 29.4
1865 Male, age 51, unknown 28.9
1904 Male, age 53, unknown 28.4
2503 Female, age 72, unknown 27.5
1954 Female, age 42, unknown 27.3
1821 Female, age 72, unknown 26.9
2725 Female, age 75, unknown 26.6
Substantia nigra
nTPM: 27.4
2665 Male, age 74, both hemispheres 30.6
1889 Female, age 72, unknown 30.2
2583 Male, age 75, right hemisphere 29.6
1851 Male, age 51, unknown 27.8
2590 Female, age 75, unknown 27.8
1916 Female, age 42, unknown 27.2
2409 Female, age 72, unknown 26.6
2699 Male, age 18, unknown 25.8
1941 Male, age 53, unknown 25.6
2241 Male, age 72, unknown 22.8
Superior colliculus
nTPM: 29.5
2664 Male, age 75, both hemispheres 32.9
2087 Female, age 72, unknown 32.6
1995 Male, age 72, unknown 30.6
1913 Female, age 42, unknown 30.2
2261 Male, age 18, unknown 29.7
1796 Male, age 53, unknown 28.5
2668 Female, age 75, unknown 28.4
1839 Male, age 51, unknown 28.3
1895 Male, age 76, right hemisphere 27.5
2587 Male, age 74, left hemisphere 26.1
Ventral tegmental area
nTPM: 25.8
2410 Female, age 72, unknown 27.7
1915 Female, age 42, unknown 26.7
1942 Male, age 51, unknown 26.0
2021 Male, age 53, unknown 25.8
2223 Female, age 72, unknown 24.9
2218 Male, age 76, both hemispheres 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 47.5
Min nTPM: 18.0
Std nTPM: 4.9
Median nTPM: 29.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 47.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 41.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 37.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 37.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 37.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 37.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 35.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.4
FF:10158-103A5 76 years, female 20.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.0
Sample A Female 11.7
Sample B Female 8.0
Sample C Male 9.9
Sample D Male 8.4
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 7.9
Min nTPM: 7.1
Sample B Female 7.1
Sample C Male 7.9
Sample D Male 7.1
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.0
Sample A Female 10.4
Sample B Female 10.6
Sample C Male 9.0
Sample D Male 9.8
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 15.3
Sample C Male 10.7
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.6
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.9
Sample A Male 16.4
Sample B Male 13.9
Sample C Female 15.7
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69169505 Antisense, RP_050321_03_F12, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.