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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:106.8 nTPM
HPA:106.8 nTPM
GTEx:126.6 nTPM
FANTOM5:96.4 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:183.9 nTPM
Allen mouse:12.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 106.8
Sample id Sample description nTPM
Amygdala
nTPM: 106.6
2814 Male, age 76, right hemisphere 114.0
2695 Female, age 67, right hemisphere 111.7
2514 Male, age 75, right hemisphere 105.6
2517 Female, age 94, left hemisphere 101.1
1987 Female, age 91, left hemisphere 100.4
Basal amygdala
nTPM: 106.1
2609 Male, age 75, right hemisphere 111.2
2110 Male, age 80, left hemisphere 106.0
2243 Female, age 91, right hemisphere 105.8
2685 Female, age 94, left hemisphere 105.4
1955 Male, age 76, both hemispheres 105.0
2827 Female, age 67, right hemisphere 103.1
Central amygdala
nTPM: 106.7
2826 Female, age 94, left hemisphere 118.2
2515 Male, age 75, right hemisphere 107.0
1905 Male, age 76, both hemispheres 106.9
2239 Male, age 80, left hemisphere 103.4
2701 Female, age 91, right hemisphere 97.9
Corticomedial amygdala
nTPM: 102.7
2428 Male, age 75, right hemisphere 108.0
2829 Male, age 80, left hemisphere 106.3
2429 Female, age 94, left hemisphere 102.8
2535 Female, age 67, right hemisphere 100.0
2240 Male, age 76, both hemispheres 99.9
2242 Female, age 91, right hemisphere 99.4
Lateral amygdala
nTPM: 106.8
1883 Male, age 76, both hemispheres 112.7
2534 Female, age 94, left hemisphere 112.4
2516 Male, age 75, right hemisphere 111.3
2830 Female, age 67, right hemisphere 107.1
2256 Male, age 80, left hemisphere 100.0
2255 Female, age 91, right hemisphere 97.1
Stria terminalis, bed nucleus
nTPM: 101.0
1974 Female, age 91, both hemispheres 108.5
2486 Female, age 94, both hemispheres 99.3
2201 Male, age 74, unknown 95.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 126.6
Samples: 152

Max nTPM: 389.6
Min nTPM: 71.7
Std nTPM: 37.5
Median nTPM: 118.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 389.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 230.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 228.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 200.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 199.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 198.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 194.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 193.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 193.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 177.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 167.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 165.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 164.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 163.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 163.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 162.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 161.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 160.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 160.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 158.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 157.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 157.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 156.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 154.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 154.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 153.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 152.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 151.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 150.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 149.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 148.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 147.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 145.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 145.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 145.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 145.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 142.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 141.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 139.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 137.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 136.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 136.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 133.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 132.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 128.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 127.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 127.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 127.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 126.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 126.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 126.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 124.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 123.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 123.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 122.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 121.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 120.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 120.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 120.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 119.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 118.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 118.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 118.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 117.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 116.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 116.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 115.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 115.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 115.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 115.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 115.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 112.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 112.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 112.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 111.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 111.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 110.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 110.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 109.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 108.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 106.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 105.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 105.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 104.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 104.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 103.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 103.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 103.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 102.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 101.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 98.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 97.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 95.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 94.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 93.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 93.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 90.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 90.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 89.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 88.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 87.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 86.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 86.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 86.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 82.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 80.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 77.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 73.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 96.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 96.4
FF:10151-102I7 76 years, female 96.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.3
Pig sample Sample description nTPM
Amygdala
nTPM: 31.3
Samples: 4

Max nTPM: 39.6
Min nTPM: 23.7
Sample A Female 39.6
Sample B Female 30.8
Sample C Male 31.2
Sample D Male 23.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 183.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 183.9
Samples: 4

Max nTPM: 196.0
Min nTPM: 170.6
Sample A Male 191.3
Sample B Male 196.0
Sample C Female 170.6
Sample D Female 177.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.5
392935 Antisense, RP_040804_02_A06, Mouse strain C57BL/6J (56 days, male) 18.7
70919149 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 6.3
73512199 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 5.7

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