MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.7 nTPM
HPA:114.7 nTPM
GTEx:121.3 nTPM
FANTOM5:78.4 Scaled Tags Per Million
Pig:48.8 nTPM
Mouse:167.2 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.5
2666 Male, age 74, left hemisphere 114.0
2586 Male, age 75, left hemisphere 112.8
2019 Male, age 18, unknown 110.3
1827 Male, age 72, unknown 109.7
2828 Female, age 72, unknown 106.4
2219 Male, age 76, both hemispheres 104.7
1870 Female, age 42, unknown 102.9
2411 Female, age 72, unknown 102.9
1830 Male, age 51, unknown 100.8
1833 Male, age 53, unknown 100.8
Dorsal raphe nucleus
nTPM: 102.4
2298 Female, age 72, unknown 103.9
1828 Male, age 53, unknown 103.4
2750 Male, age 76, both hemispheres 103.3
2047 Male, age 72, unknown 103.1
2016 Female, age 72, unknown 98.4
Inferior colliculus
nTPM: 100.7
1890 Male, age 53, unknown 103.4
2097 Female, age 72, unknown 102.2
2849 Male, age 72, unknown 99.0
1848 Female, age 42, unknown 98.3
Median raphe nucleus
nTPM: 104.2
2220 Male, age 76, midline 104.2
Pedunculopontine tegmental nucleus
nTPM: 105.8
2334 Male, age 80, both hemispheres 107.7
1921 Female, age 85, both hemispheres 105.0
2338 Male, age 61, both hemispheres 104.9
Periaquaductal grey, anterior
nTPM: 105.0
1947 Male, age 18, unknown 106.3
1795 Male, age 51, unknown 105.8
2502 Female, age 75, unknown 103.1
Periaquaductal grey, dorsal
nTPM: 97.7
1840 Male, age 53, unknown 100.3
2850 Male, age 76, both hemispheres 97.6
2464 Female, age 72, unknown 96.7
1831 Male, age 72, unknown 96.4
Periaquaductal grey, lateral
nTPM: 96.2
2053 Male, age 18, unknown 96.6
2140 Male, age 76, both hemispheres 96.3
2272 Male, age 74, both hemispheres 95.9
Pretectal area
nTPM: 106.6
2007 Male, age 72, unknown 119.4
1817 Female, age 42, unknown 117.9
1815 Male, age 53, unknown 113.7
1816 Male, age 51, unknown 113.1
1944 Female, age 72, unknown 113.0
2667 Female, age 75, unknown 104.3
2407 Male, age 75, both hemispheres 100.3
2825 Male, age 18, unknown 99.9
2224 Female, age 72, unknown 98.8
2273 Male, age 74, both hemispheres 97.5
2316 Male, age 76, right hemisphere 95.1
Red nucleus
nTPM: 105.3
2785 Male, age 18, unknown 111.4
1821 Female, age 72, unknown 109.8
2588 Male, age 74, left hemisphere 109.2
2725 Female, age 75, unknown 108.8
2503 Female, age 72, unknown 105.2
1865 Male, age 51, unknown 103.9
2584 Male, age 75, left hemisphere 103.9
1954 Female, age 42, unknown 103.1
1904 Male, age 53, unknown 102.7
2227 Male, age 72, unknown 102.4
2769 Male, age 72, unknown 102.4
2823 Male, age 76, right hemisphere 101.0
Substantia nigra
nTPM: 114.7
1916 Female, age 42, unknown 136.0
1851 Male, age 51, unknown 121.6
1889 Female, age 72, unknown 116.1
2665 Male, age 74, both hemispheres 115.5
2241 Male, age 72, unknown 112.9
2409 Female, age 72, unknown 111.6
2699 Male, age 18, unknown 111.6
1941 Male, age 53, unknown 110.7
2583 Male, age 75, right hemisphere 108.4
2590 Female, age 75, unknown 102.9
Superior colliculus
nTPM: 104.0
2668 Female, age 75, unknown 114.9
1796 Male, age 53, unknown 108.5
2087 Female, age 72, unknown 107.0
2664 Male, age 75, both hemispheres 105.2
2587 Male, age 74, left hemisphere 104.1
2261 Male, age 18, unknown 101.0
1839 Male, age 51, unknown 100.4
1895 Male, age 76, right hemisphere 100.0
1913 Female, age 42, unknown 100.0
1995 Male, age 72, unknown 99.0
Ventral tegmental area
nTPM: 106.8
1915 Female, age 42, unknown 116.0
2410 Female, age 72, unknown 111.1
2218 Male, age 76, both hemispheres 107.5
1942 Male, age 51, unknown 103.9
2223 Female, age 72, unknown 103.2
2021 Male, age 53, unknown 99.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 121.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.3
Samples: 139

Max nTPM: 215.4
Min nTPM: 71.4
Std nTPM: 26.3
Median nTPM: 117.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 215.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 207.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 205.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 191.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 183.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 168.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 166.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 165.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 160.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 158.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.4
FF:10158-103A5 76 years, female 78.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.8
Pig sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 39.3
Sample A Female 43.9
Sample B Female 50.7
Sample C Male 43.3
Sample D Male 39.3
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 46.5
Min nTPM: 29.6
Sample B Female 44.3
Sample C Male 46.5
Sample D Male 29.6
Substantia nigra
nTPM: 48.9
Samples: 4

Max nTPM: 63.3
Min nTPM: 32.2
Sample A Female 63.3
Sample B Female 41.6
Sample C Male 58.3
Sample D Male 32.2
Superior colliculi
nTPM: 48.7
Samples: 4

Max nTPM: 57.4
Min nTPM: 39.6
Sample A Female 57.4
Sample B Female 39.6
Sample C Male 54.7
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.2
Samples: 4

Max nTPM: 177.3
Min nTPM: 157.5
Sample A Male 177.3
Sample B Male 163.3
Sample C Female 157.5
Sample D Female 170.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
392935 Antisense, RP_040804_02_A06, Mouse strain C57BL/6J (56 days, male) 10.7
73512199 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 4.4
70919149 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.