MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:28.1 nTPM
FANTOM5:16.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
2019 Male, age 18, unknown 30.7
1827 Male, age 72, unknown 29.8
2828 Female, age 72, unknown 29.3
1870 Female, age 42, unknown 28.2
2586 Male, age 75, left hemisphere 27.4
2666 Male, age 74, left hemisphere 27.3
1833 Male, age 53, unknown 26.9
2411 Female, age 72, unknown 26.8
1830 Male, age 51, unknown 26.7
2219 Male, age 76, both hemispheres 26.3
Dorsal raphe nucleus
nTPM: 27.4
2298 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 27.4
2016 Female, age 72, unknown 27.3
2750 Male, age 76, both hemispheres 27.3
2047 Male, age 72, unknown 26.7
Inferior colliculus
nTPM: 27.5
2097 Female, age 72, unknown 28.0
1848 Female, age 42, unknown 27.7
2849 Male, age 72, unknown 27.3
1890 Male, age 53, unknown 27.0
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Pedunculopontine tegmental nucleus
nTPM: 27.9
2338 Male, age 61, both hemispheres 28.1
1921 Female, age 85, both hemispheres 27.8
2334 Male, age 80, both hemispheres 27.8
Periaquaductal grey, anterior
nTPM: 29.4
1795 Male, age 51, unknown 31.2
2502 Female, age 75, unknown 28.9
1947 Male, age 18, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 28.3
2850 Male, age 76, both hemispheres 29.6
1831 Male, age 72, unknown 28.6
1840 Male, age 53, unknown 28.2
2464 Female, age 72, unknown 26.8
Periaquaductal grey, lateral
nTPM: 28.0
2272 Male, age 74, both hemispheres 28.4
2140 Male, age 76, both hemispheres 27.8
2053 Male, age 18, unknown 27.7
Pretectal area
nTPM: 30.0
1816 Male, age 51, unknown 32.3
2007 Male, age 72, unknown 31.7
1944 Female, age 72, unknown 31.5
1815 Male, age 53, unknown 30.2
2667 Female, age 75, unknown 30.0
2273 Male, age 74, both hemispheres 29.9
1817 Female, age 42, unknown 29.8
2407 Male, age 75, both hemispheres 29.7
2316 Male, age 76, right hemisphere 28.9
2224 Female, age 72, unknown 28.5
2825 Male, age 18, unknown 27.1
Red nucleus
nTPM: 28.0
2725 Female, age 75, unknown 29.5
2588 Male, age 74, left hemisphere 29.2
1865 Male, age 51, unknown 29.1
2503 Female, age 72, unknown 28.6
2584 Male, age 75, left hemisphere 28.0
1904 Male, age 53, unknown 27.9
1954 Female, age 42, unknown 27.5
2227 Male, age 72, unknown 27.5
2785 Male, age 18, unknown 27.5
2823 Male, age 76, right hemisphere 27.4
1821 Female, age 72, unknown 27.3
2769 Male, age 72, unknown 26.5
Substantia nigra
nTPM: 27.7
1851 Male, age 51, unknown 28.8
1889 Female, age 72, unknown 28.8
2409 Female, age 72, unknown 28.2
2583 Male, age 75, right hemisphere 27.9
1916 Female, age 42, unknown 27.8
2699 Male, age 18, unknown 27.7
2241 Male, age 72, unknown 27.4
1941 Male, age 53, unknown 27.2
2665 Male, age 74, both hemispheres 27.2
2590 Female, age 75, unknown 26.4
Superior colliculus
nTPM: 28.7
2261 Male, age 18, unknown 31.3
2087 Female, age 72, unknown 29.9
1796 Male, age 53, unknown 29.6
2664 Male, age 75, both hemispheres 29.1
2668 Female, age 75, unknown 29.0
1995 Male, age 72, unknown 28.7
2587 Male, age 74, left hemisphere 28.0
1913 Female, age 42, unknown 27.8
1839 Male, age 51, unknown 27.4
1895 Male, age 76, right hemisphere 26.5
Ventral tegmental area
nTPM: 26.9
2218 Male, age 76, both hemispheres 27.8
2021 Male, age 53, unknown 27.6
1915 Female, age 42, unknown 27.0
2223 Female, age 72, unknown 27.0
2410 Female, age 72, unknown 26.9
1942 Male, age 51, unknown 25.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 139

Max nTPM: 67.8
Min nTPM: 11.9
Std nTPM: 9.8
Median nTPM: 25.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 67.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 45.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 45.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 44.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 43.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 42.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.9
FF:10158-103A5 76 years, female 16.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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