MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA:14.7 nTPM
GTEx:18.2 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Mouse:3.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.4
1830 Male, age 51, unknown 11.6
1833 Male, age 53, unknown 11.5
2219 Male, age 76, both hemispheres 9.9
2411 Female, age 72, unknown 9.6
2666 Male, age 74, left hemisphere 9.6
1870 Female, age 42, unknown 9.5
1827 Male, age 72, unknown 9.2
2828 Female, age 72, unknown 8.3
2586 Male, age 75, left hemisphere 7.7
2019 Male, age 18, unknown 7.1
Dorsal raphe nucleus
nTPM: 11.0
2750 Male, age 76, both hemispheres 11.5
2047 Male, age 72, unknown 11.3
1828 Male, age 53, unknown 11.0
2298 Female, age 72, unknown 10.9
2016 Female, age 72, unknown 10.4
Inferior colliculus
nTPM: 11.2
2849 Male, age 72, unknown 12.6
1848 Female, age 42, unknown 11.7
2097 Female, age 72, unknown 10.4
1890 Male, age 53, unknown 10.0
Median raphe nucleus
nTPM: 14.7
2220 Male, age 76, midline 14.7
Pedunculopontine tegmental nucleus
nTPM: 10.9
2338 Male, age 61, both hemispheres 14.4
2334 Male, age 80, both hemispheres 9.3
1921 Female, age 85, both hemispheres 8.9
Periaquaductal grey, anterior
nTPM: 11.4
1947 Male, age 18, unknown 12.4
2502 Female, age 75, unknown 11.3
1795 Male, age 51, unknown 10.5
Periaquaductal grey, dorsal
nTPM: 10.5
2850 Male, age 76, both hemispheres 11.8
1840 Male, age 53, unknown 10.9
2464 Female, age 72, unknown 10.0
1831 Male, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 10.4
2140 Male, age 76, both hemispheres 12.2
2053 Male, age 18, unknown 9.6
2272 Male, age 74, both hemispheres 9.3
Pretectal area
nTPM: 9.3
2825 Male, age 18, unknown 13.2
2224 Female, age 72, unknown 11.6
2316 Male, age 76, right hemisphere 11.2
2407 Male, age 75, both hemispheres 10.6
2667 Female, age 75, unknown 9.4
2273 Male, age 74, both hemispheres 9.2
1944 Female, age 72, unknown 9.0
1815 Male, age 53, unknown 7.8
1816 Male, age 51, unknown 7.1
2007 Male, age 72, unknown 6.9
1817 Female, age 42, unknown 6.7
Red nucleus
nTPM: 8.9
2584 Male, age 75, left hemisphere 10.3
2769 Male, age 72, unknown 9.8
2227 Male, age 72, unknown 9.3
1821 Female, age 72, unknown 9.1
2503 Female, age 72, unknown 9.1
2823 Male, age 76, right hemisphere 9.0
1865 Male, age 51, unknown 8.8
1904 Male, age 53, unknown 8.6
2725 Female, age 75, unknown 8.5
2588 Male, age 74, left hemisphere 8.3
1954 Female, age 42, unknown 8.2
2785 Male, age 18, unknown 7.6
Substantia nigra
nTPM: 10.6
2241 Male, age 72, unknown 12.3
1916 Female, age 42, unknown 11.6
2699 Male, age 18, unknown 11.1
2409 Female, age 72, unknown 11.0
1851 Male, age 51, unknown 10.8
2590 Female, age 75, unknown 10.8
1941 Male, age 53, unknown 10.5
2583 Male, age 75, right hemisphere 10.1
2665 Male, age 74, both hemispheres 9.6
1889 Female, age 72, unknown 7.9
Superior colliculus
nTPM: 9.0
1839 Male, age 51, unknown 10.4
1796 Male, age 53, unknown 9.9
2587 Male, age 74, left hemisphere 9.5
1895 Male, age 76, right hemisphere 9.1
2261 Male, age 18, unknown 9.1
2087 Female, age 72, unknown 8.7
2668 Female, age 75, unknown 8.7
1995 Male, age 72, unknown 8.6
2664 Male, age 75, both hemispheres 8.0
1913 Female, age 42, unknown 7.6
Ventral tegmental area
nTPM: 9.4
1915 Female, age 42, unknown 10.4
2223 Female, age 72, unknown 9.7
2218 Male, age 76, both hemispheres 9.6
2410 Female, age 72, unknown 9.3
1942 Male, age 51, unknown 8.9
2021 Male, age 53, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 43.7
Min nTPM: 4.2
Std nTPM: 6.9
Median nTPM: 17.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 43.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 39.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 34.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 34.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 33.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 33.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 33.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 31.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.3
Sample A Male 4.0
Sample B Male 4.0
Sample C Female 3.3
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
71654134 Antisense, RP_050927_03_D08, Mouse strain C57BL/6J (56 days, male) 2.5

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