We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HTRA1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • HTRA1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:491.9 nTPM
FANTOM5:238.3 Scaled Tags Per Million
Pig:61.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA036655
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 491.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 491.9
Samples: 246

Max nTPM: 1480.1
Min nTPM: 104.2
Std nTPM: 200.2
Median nTPM: 457.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1480.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1147.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1102.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1082.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1076.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1068.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 973.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 908.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 900.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 874.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 847.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 846.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 843.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 834.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 833.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 833.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 818.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 810.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 806.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 798.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 793.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 791.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 783.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 773.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 754.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 740.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 736.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 731.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 727.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 715.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 711.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 710.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 710.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 709.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 702.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 696.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 692.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 687.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 684.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 677.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 677.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 669.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 658.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 652.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 645.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 645.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 640.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 637.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 636.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 631.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 629.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 629.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 628.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 627.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 625.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 624.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 616.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 616.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 615.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 614.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 612.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 594.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 589.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 584.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 582.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 581.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 573.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 568.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 567.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 567.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 566.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 564.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 563.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 561.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 560.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 556.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 554.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 553.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 552.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 551.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 551.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 551.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 547.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 545.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 542.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 542.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 540.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 540.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 537.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 534.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 533.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 531.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 527.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 527.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 525.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 524.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 523.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 519.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 516.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 513.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 513.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 501.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 498.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 494.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 491.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 491.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 487.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 486.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 483.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 482.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 480.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 479.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 478.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 478.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 478.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 475.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 474.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 473.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 472.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 465.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 464.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 459.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 457.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 456.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 456.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 456.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 455.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 455.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 452.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 450.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 443.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 442.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 436.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 433.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 432.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 432.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 431.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 428.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 427.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 426.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 420.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 417.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 417.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 415.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 414.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 409.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 406.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 401.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 400.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 399.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 398.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 395.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 392.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 390.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 387.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 387.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 385.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 382.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 377.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 374.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 374.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 373.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 372.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 371.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 369.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 369.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 369.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 368.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 368.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 368.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 365.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 365.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 358.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 358.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 357.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 357.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 356.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 353.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 353.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 352.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 349.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 348.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 347.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 345.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 344.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 343.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 342.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 341.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 338.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 337.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 335.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 335.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 334.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 334.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 333.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 333.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 330.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 327.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 325.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 324.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 321.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 320.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 313.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 311.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 311.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 308.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 304.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 301.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 300.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 300.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 299.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 298.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 291.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 290.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 290.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 289.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 288.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 288.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 287.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 285.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 283.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 283.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 279.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 278.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 274.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 273.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 273.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 273.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 270.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 268.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 264.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 263.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 258.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 251.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 247.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 238.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 232.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 230.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 223.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 208.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 206.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 201.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 187.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 177.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 130.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 104.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 238.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 238.3
FF:10164-103B2 76 years, female 238.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.4
Pig sample Sample description nTPM
Caudate
nTPM: 61.4
Samples: 4

Max nTPM: 71.2
Min nTPM: 50.6
Sample A Female 50.6
Sample B Female 67.7
Sample C Male 71.2
Sample D Male 56.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.