MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:439.4 nTPM
HPA:439.4 nTPM
GTEx:386.0 nTPM
FANTOM5:166.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 439.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 411.2
1827 Male, age 72, unknown 421.2
2666 Male, age 74, left hemisphere 419.4
2219 Male, age 76, both hemispheres 417.9
1870 Female, age 42, unknown 415.3
2019 Male, age 18, unknown 411.6
2586 Male, age 75, left hemisphere 410.5
2828 Female, age 72, unknown 409.1
2411 Female, age 72, unknown 407.3
1833 Male, age 53, unknown 401.1
1830 Male, age 51, unknown 398.2
Dorsal raphe nucleus
nTPM: 411.8
2750 Male, age 76, both hemispheres 420.7
2298 Female, age 72, unknown 416.2
1828 Male, age 53, unknown 413.2
2047 Male, age 72, unknown 410.7
2016 Female, age 72, unknown 398.4
Inferior colliculus
nTPM: 413.7
2097 Female, age 72, unknown 416.6
1890 Male, age 53, unknown 415.8
1848 Female, age 42, unknown 412.0
2849 Male, age 72, unknown 410.4
Median raphe nucleus
nTPM: 439.4
2220 Male, age 76, midline 439.4
Pedunculopontine tegmental nucleus
nTPM: 425.1
2334 Male, age 80, both hemispheres 430.7
1921 Female, age 85, both hemispheres 428.5
2338 Male, age 61, both hemispheres 416.0
Periaquaductal grey, anterior
nTPM: 424.2
1947 Male, age 18, unknown 427.0
1795 Male, age 51, unknown 424.3
2502 Female, age 75, unknown 421.1
Periaquaductal grey, dorsal
nTPM: 404.5
1840 Male, age 53, unknown 410.2
2850 Male, age 76, both hemispheres 407.6
1831 Male, age 72, unknown 401.6
2464 Female, age 72, unknown 398.6
Periaquaductal grey, lateral
nTPM: 399.4
2053 Male, age 18, unknown 403.2
2272 Male, age 74, both hemispheres 398.1
2140 Male, age 76, both hemispheres 396.8
Pretectal area
nTPM: 420.7
1944 Female, age 72, unknown 446.4
1816 Male, age 51, unknown 442.0
2007 Male, age 72, unknown 441.2
1817 Female, age 42, unknown 436.0
2667 Female, age 75, unknown 422.3
1815 Male, age 53, unknown 421.3
2224 Female, age 72, unknown 419.5
2825 Male, age 18, unknown 410.4
2273 Male, age 74, both hemispheres 397.3
2407 Male, age 75, both hemispheres 396.3
2316 Male, age 76, right hemisphere 395.0
Red nucleus
nTPM: 411.9
1821 Female, age 72, unknown 426.0
2725 Female, age 75, unknown 423.3
2503 Female, age 72, unknown 419.1
2785 Male, age 18, unknown 417.8
2227 Male, age 72, unknown 410.5
2584 Male, age 75, left hemisphere 409.4
2769 Male, age 72, unknown 409.4
1954 Female, age 42, unknown 409.0
1865 Male, age 51, unknown 407.1
2823 Male, age 76, right hemisphere 406.2
1904 Male, age 53, unknown 405.1
2588 Male, age 74, left hemisphere 399.7
Substantia nigra
nTPM: 422.1
1916 Female, age 42, unknown 450.1
1889 Female, age 72, unknown 447.0
1851 Male, age 51, unknown 430.9
1941 Male, age 53, unknown 426.7
2665 Male, age 74, both hemispheres 424.5
2241 Male, age 72, unknown 416.2
2699 Male, age 18, unknown 413.9
2409 Female, age 72, unknown 411.7
2583 Male, age 75, right hemisphere 400.2
2590 Female, age 75, unknown 399.6
Superior colliculus
nTPM: 412.5
1796 Male, age 53, unknown 428.2
2087 Female, age 72, unknown 427.9
2668 Female, age 75, unknown 422.1
1895 Male, age 76, right hemisphere 417.5
2261 Male, age 18, unknown 411.7
1913 Female, age 42, unknown 410.1
2587 Male, age 74, left hemisphere 406.8
1839 Male, age 51, unknown 404.7
1995 Male, age 72, unknown 399.0
2664 Male, age 75, both hemispheres 396.6
Ventral tegmental area
nTPM: 420.4
2218 Male, age 76, both hemispheres 432.7
1915 Female, age 42, unknown 429.4
2410 Female, age 72, unknown 421.2
1942 Male, age 51, unknown 418.0
2223 Female, age 72, unknown 416.7
2021 Male, age 53, unknown 404.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 386.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 386.0
Samples: 139

Max nTPM: 868.2
Min nTPM: 200.7
Std nTPM: 106.8
Median nTPM: 366.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 868.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 719.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 670.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 641.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 624.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 611.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 596.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 588.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 568.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 560.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 546.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 166.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 166.6
FF:10158-103A5 76 years, female 166.6

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The Human Protein Atlas

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