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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:431.2 nTPM
HPA:431.2 nTPM
GTEx:539.5 nTPM
FANTOM5:220.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 431.2
Sample id Sample description nTPM
Amygdala
nTPM: 421.9
2814 Male, age 76, right hemisphere 446.8
2695 Female, age 67, right hemisphere 418.0
2514 Male, age 75, right hemisphere 416.3
1987 Female, age 91, left hemisphere 414.3
2517 Female, age 94, left hemisphere 414.3
Basal amygdala
nTPM: 423.4
2685 Female, age 94, left hemisphere 428.2
2243 Female, age 91, right hemisphere 426.9
2827 Female, age 67, right hemisphere 424.1
2110 Male, age 80, left hemisphere 422.9
2609 Male, age 75, right hemisphere 419.8
1955 Male, age 76, both hemispheres 418.7
Central amygdala
nTPM: 426.5
2826 Female, age 94, left hemisphere 468.1
1905 Male, age 76, both hemispheres 432.8
2239 Male, age 80, left hemisphere 422.8
2515 Male, age 75, right hemisphere 405.7
2701 Female, age 91, right hemisphere 403.1
Corticomedial amygdala
nTPM: 422.4
2429 Female, age 94, left hemisphere 434.0
2242 Female, age 91, right hemisphere 426.1
2535 Female, age 67, right hemisphere 425.5
2829 Male, age 80, left hemisphere 418.7
2428 Male, age 75, right hemisphere 415.0
2240 Male, age 76, both hemispheres 414.8
Lateral amygdala
nTPM: 424.7
2534 Female, age 94, left hemisphere 468.1
1883 Male, age 76, both hemispheres 430.4
2516 Male, age 75, right hemisphere 426.9
2830 Female, age 67, right hemisphere 409.4
2255 Female, age 91, right hemisphere 406.9
2256 Male, age 80, left hemisphere 406.7
Stria terminalis, bed nucleus
nTPM: 431.2
1974 Female, age 91, both hemispheres 457.9
2486 Female, age 94, both hemispheres 423.1
2201 Male, age 74, unknown 412.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 539.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 539.5
Samples: 152

Max nTPM: 1816.0
Min nTPM: 159.9
Std nTPM: 200.7
Median nTPM: 505.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1816.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1128.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1125.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1098.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1068.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 979.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 977.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 921.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 914.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 869.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 798.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 785.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 781.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 777.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 770.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 755.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 732.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 719.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 718.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 717.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 708.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 672.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 664.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 664.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 658.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 648.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 641.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 637.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 636.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 632.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 632.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 631.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 627.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 626.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 623.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 615.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 613.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 613.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 611.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 610.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 608.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 607.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 600.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 590.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 587.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 587.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 580.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 579.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 577.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 577.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 573.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 572.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 569.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 566.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 565.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 561.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 560.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 558.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 554.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 545.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 540.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 540.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 539.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 538.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 537.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 531.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 527.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 525.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 524.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 522.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 521.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 519.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 517.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 515.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 507.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 507.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 504.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 503.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 503.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 500.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 496.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 489.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 487.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 486.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 485.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 481.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 481.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 478.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 477.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 476.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 476.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 472.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 464.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 458.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 455.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 455.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 454.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 452.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 449.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 448.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 448.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 448.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 444.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 442.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 440.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 438.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 437.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 434.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 432.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 427.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 423.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 421.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 419.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 416.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 413.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 411.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 404.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 397.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 387.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 387.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 385.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 384.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 383.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 383.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 381.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 379.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 378.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 378.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 374.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 372.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 371.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 371.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 369.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 368.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 366.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 365.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 362.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 358.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 356.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 348.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 335.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 329.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 323.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 318.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 303.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 298.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 294.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 293.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 288.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 271.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 261.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 159.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 220.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 220.9
FF:10151-102I7 76 years, female 220.9

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