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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:561.8 nTPM
GTEx:874.3 nTPM
FANTOM5:4418.8 Scaled Tags Per Million
Pig:991.6 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 561.8
Sample id Sample description nTPM
Putamen
nTPM: 561.8
2466 Female, age 79, unknown 657.7
1829 Male, age 74, unknown 645.2
1838 Male, age 80, right hemisphere 599.6
1937 Female, age 91, right hemisphere 563.5
2482 Female, age 94, left hemisphere 524.9
2647 Male, age 75, left hemisphere 513.8
2489 Female, age 72, unknown 428.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 874.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 874.3
Samples: 205

Max nTPM: 1663.1
Min nTPM: 284.1
Std nTPM: 259.6
Median nTPM: 869.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 1663.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 1446.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 1437.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 1423.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 1412.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1409.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 1385.2
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 1362.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 1361.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 1344.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 1343.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 1312.4
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1305.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 1292.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 1273.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 1270.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1266.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1254.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 1250.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 1237.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 1236.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1232.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 1218.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 1216.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 1194.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 1194.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 1189.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1170.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1161.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 1158.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1151.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 1151.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 1150.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 1149.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1147.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 1145.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1140.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1136.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 1135.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 1134.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 1132.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 1131.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 1119.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1115.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1100.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 1085.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 1063.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 1049.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1044.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1030.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 1023.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 1021.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 1015.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1014.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 1002.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 1001.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 998.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 996.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 992.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 992.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 977.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 977.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 973.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 973.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 969.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 968.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 963.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 963.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 962.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 960.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 956.5
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 953.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 950.9
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 949.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 947.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 945.2
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 940.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 938.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 937.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 936.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 930.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 928.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 925.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 925.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 922.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 916.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 915.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 902.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 900.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 899.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 894.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 890.4
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 888.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 885.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 885.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 882.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 879.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 876.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 876.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 873.7
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 873.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 873.0
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 869.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 863.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 861.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 861.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 861.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 860.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 852.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 848.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 838.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 836.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 835.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 833.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 828.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 825.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 823.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 822.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 818.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 810.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 809.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 805.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 800.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 798.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 795.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 793.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 784.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 783.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 782.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 764.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 764.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 763.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 760.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 758.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 756.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 756.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 749.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 748.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 743.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 742.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 741.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 740.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 738.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 733.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 729.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 726.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 726.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 726.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 719.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 717.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 717.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 715.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 714.2
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 710.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 708.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 702.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 698.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 696.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 695.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 689.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 667.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 662.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 660.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 660.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 657.2
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 655.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 638.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 631.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 628.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 625.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 619.1
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 613.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 610.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 607.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 606.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 601.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 598.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 592.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 588.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 586.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 586.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 572.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 563.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 540.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 526.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 523.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 521.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 518.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 515.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 509.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 493.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 492.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 474.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 470.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 437.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 435.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 433.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 429.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 396.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 386.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 350.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 344.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 331.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 324.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 284.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4418.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 4418.8
FF:10176-103C5 60 years, female 4418.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 991.6
Pig sample Sample description nTPM
Putamen
nTPM: 991.6
Samples: 4

Max nTPM: 1507.6
Min nTPM: 644.5
Sample A Female 644.5
Sample B Female 811.2
Sample C Male 1507.6
Sample D Male 1003.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.