MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:28.4 nTPM
FANTOM5:90.9 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:113.8 nTPM
Allen mouse:8.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.5
1870 Female, age 42, unknown 28.1
2411 Female, age 72, unknown 27.6
2019 Male, age 18, unknown 25.3
1830 Male, age 51, unknown 24.7
1833 Male, age 53, unknown 23.7
1827 Male, age 72, unknown 23.3
2219 Male, age 76, both hemispheres 22.3
2828 Female, age 72, unknown 18.6
2666 Male, age 74, left hemisphere 17.7
2586 Male, age 75, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 23.9
2298 Female, age 72, unknown 26.5
2750 Male, age 76, both hemispheres 26.4
1828 Male, age 53, unknown 23.8
2047 Male, age 72, unknown 22.8
2016 Female, age 72, unknown 20.3
Inferior colliculus
nTPM: 24.4
2097 Female, age 72, unknown 29.0
1848 Female, age 42, unknown 24.4
2849 Male, age 72, unknown 22.6
1890 Male, age 53, unknown 21.8
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Pedunculopontine tegmental nucleus
nTPM: 27.7
2338 Male, age 61, both hemispheres 28.2
1921 Female, age 85, both hemispheres 27.4
2334 Male, age 80, both hemispheres 27.4
Periaquaductal grey, anterior
nTPM: 23.0
1947 Male, age 18, unknown 25.8
2502 Female, age 75, unknown 24.0
1795 Male, age 51, unknown 19.2
Periaquaductal grey, dorsal
nTPM: 21.8
2850 Male, age 76, both hemispheres 24.0
1840 Male, age 53, unknown 22.1
2464 Female, age 72, unknown 20.7
1831 Male, age 72, unknown 20.6
Periaquaductal grey, lateral
nTPM: 22.4
2272 Male, age 74, both hemispheres 24.3
2053 Male, age 18, unknown 21.6
2140 Male, age 76, both hemispheres 21.5
Pretectal area
nTPM: 23.7
2007 Male, age 72, unknown 26.2
1817 Female, age 42, unknown 26.1
2273 Male, age 74, both hemispheres 25.8
1815 Male, age 53, unknown 25.0
1816 Male, age 51, unknown 24.8
2224 Female, age 72, unknown 24.2
1944 Female, age 72, unknown 24.0
2825 Male, age 18, unknown 22.8
2316 Male, age 76, right hemisphere 21.8
2667 Female, age 75, unknown 20.8
2407 Male, age 75, both hemispheres 19.4
Red nucleus
nTPM: 24.6
1821 Female, age 72, unknown 33.2
1954 Female, age 42, unknown 26.7
1865 Male, age 51, unknown 26.3
2503 Female, age 72, unknown 25.1
2823 Male, age 76, right hemisphere 25.0
1904 Male, age 53, unknown 24.8
2725 Female, age 75, unknown 24.5
2227 Male, age 72, unknown 24.2
2769 Male, age 72, unknown 23.7
2785 Male, age 18, unknown 23.4
2588 Male, age 74, left hemisphere 20.7
2584 Male, age 75, left hemisphere 17.5
Substantia nigra
nTPM: 23.6
1889 Female, age 72, unknown 28.9
2409 Female, age 72, unknown 27.4
2241 Male, age 72, unknown 26.6
1941 Male, age 53, unknown 26.4
1916 Female, age 42, unknown 23.5
2590 Female, age 75, unknown 23.2
1851 Male, age 51, unknown 22.8
2699 Male, age 18, unknown 19.7
2665 Male, age 74, both hemispheres 19.1
2583 Male, age 75, right hemisphere 18.7
Superior colliculus
nTPM: 23.4
2587 Male, age 74, left hemisphere 28.5
1895 Male, age 76, right hemisphere 27.1
2668 Female, age 75, unknown 24.9
1913 Female, age 42, unknown 24.6
1839 Male, age 51, unknown 24.4
2261 Male, age 18, unknown 23.6
1796 Male, age 53, unknown 22.4
2087 Female, age 72, unknown 21.9
1995 Male, age 72, unknown 21.4
2664 Male, age 75, both hemispheres 15.7
Ventral tegmental area
nTPM: 24.3
2223 Female, age 72, unknown 28.9
2410 Female, age 72, unknown 26.5
2218 Male, age 76, both hemispheres 24.9
1915 Female, age 42, unknown 22.6
1942 Male, age 51, unknown 22.0
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 56.8
Min nTPM: 14.7
Std nTPM: 8.6
Median nTPM: 25.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 56.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 56.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 53.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 45.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 44.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.9
FF:10158-103A5 76 years, female 90.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 65.0
Min nTPM: 46.2
Sample A Female 54.0
Sample B Female 46.2
Sample C Male 65.0
Sample D Male 56.9
Periaqueductal gray
nTPM: 37.3
Samples: 3

Max nTPM: 42.4
Min nTPM: 32.4
Sample B Female 32.4
Sample C Male 42.4
Sample D Male 37.2
Substantia nigra
nTPM: 44.6
Samples: 4

Max nTPM: 63.8
Min nTPM: 31.6
Sample A Female 63.8
Sample B Female 38.4
Sample C Male 44.5
Sample D Male 31.6
Superior colliculi
nTPM: 55.1
Samples: 4

Max nTPM: 66.8
Min nTPM: 38.2
Sample A Female 61.8
Sample B Female 38.2
Sample C Male 66.8
Sample D Male 53.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 118.8
Min nTPM: 109.3
Sample A Male 109.3
Sample B Male 116.3
Sample C Female 118.8
Sample D Female 110.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
68563056 Antisense, RP_050125_01_A08, Mouse strain C57BL/6J (56 days, male) 8.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.