MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:138.5 nTPM
HPA:138.5 nTPM
GTEx:72.5 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:55.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.1
2411 Female, age 72, unknown 118.3
1827 Male, age 72, unknown 117.4
2666 Male, age 74, left hemisphere 117.3
2828 Female, age 72, unknown 115.7
2586 Male, age 75, left hemisphere 115.0
1870 Female, age 42, unknown 113.6
2219 Male, age 76, both hemispheres 111.0
1833 Male, age 53, unknown 110.9
1830 Male, age 51, unknown 109.0
2019 Male, age 18, unknown 103.2
Dorsal raphe nucleus
nTPM: 122.6
2298 Female, age 72, unknown 130.6
2750 Male, age 76, both hemispheres 128.2
2047 Male, age 72, unknown 125.9
1828 Male, age 53, unknown 114.7
2016 Female, age 72, unknown 113.8
Inferior colliculus
nTPM: 110.5
2849 Male, age 72, unknown 113.5
1848 Female, age 42, unknown 111.0
2097 Female, age 72, unknown 110.6
1890 Male, age 53, unknown 107.1
Median raphe nucleus
nTPM: 138.5
2220 Male, age 76, midline 138.5
Pedunculopontine tegmental nucleus
nTPM: 120.9
2334 Male, age 80, both hemispheres 127.2
1921 Female, age 85, both hemispheres 119.6
2338 Male, age 61, both hemispheres 116.0
Periaquaductal grey, anterior
nTPM: 118.6
1795 Male, age 51, unknown 121.3
1947 Male, age 18, unknown 120.7
2502 Female, age 75, unknown 113.9
Periaquaductal grey, dorsal
nTPM: 116.8
2850 Male, age 76, both hemispheres 121.7
1840 Male, age 53, unknown 120.7
2464 Female, age 72, unknown 113.7
1831 Male, age 72, unknown 111.1
Periaquaductal grey, lateral
nTPM: 113.0
2053 Male, age 18, unknown 116.3
2140 Male, age 76, both hemispheres 114.3
2272 Male, age 74, both hemispheres 108.5
Pretectal area
nTPM: 116.4
2224 Female, age 72, unknown 124.2
1817 Female, age 42, unknown 122.6
1816 Male, age 51, unknown 121.9
2825 Male, age 18, unknown 120.6
2007 Male, age 72, unknown 118.7
1944 Female, age 72, unknown 118.2
1815 Male, age 53, unknown 117.3
2667 Female, age 75, unknown 115.0
2273 Male, age 74, both hemispheres 111.0
2316 Male, age 76, right hemisphere 107.0
2407 Male, age 75, both hemispheres 103.7
Red nucleus
nTPM: 107.4
2725 Female, age 75, unknown 111.1
1821 Female, age 72, unknown 110.1
2584 Male, age 75, left hemisphere 109.8
2503 Female, age 72, unknown 109.0
1954 Female, age 42, unknown 108.0
2823 Male, age 76, right hemisphere 107.8
2588 Male, age 74, left hemisphere 107.6
2227 Male, age 72, unknown 107.4
2769 Male, age 72, unknown 105.9
2785 Male, age 18, unknown 104.9
1865 Male, age 51, unknown 104.6
1904 Male, age 53, unknown 103.0
Substantia nigra
nTPM: 115.5
1941 Male, age 53, unknown 123.2
1916 Female, age 42, unknown 118.9
2665 Male, age 74, both hemispheres 118.3
1851 Male, age 51, unknown 117.8
1889 Female, age 72, unknown 117.5
2699 Male, age 18, unknown 115.7
2241 Male, age 72, unknown 115.1
2583 Male, age 75, right hemisphere 111.0
2590 Female, age 75, unknown 110.9
2409 Female, age 72, unknown 106.2
Superior colliculus
nTPM: 112.1
2261 Male, age 18, unknown 117.1
2668 Female, age 75, unknown 116.8
1796 Male, age 53, unknown 115.9
1839 Male, age 51, unknown 113.1
2087 Female, age 72, unknown 112.8
2587 Male, age 74, left hemisphere 112.6
2664 Male, age 75, both hemispheres 109.6
1895 Male, age 76, right hemisphere 109.2
1913 Female, age 42, unknown 107.7
1995 Male, age 72, unknown 106.5
Ventral tegmental area
nTPM: 117.3
2021 Male, age 53, unknown 119.9
2218 Male, age 76, both hemispheres 119.8
2410 Female, age 72, unknown 118.8
1915 Female, age 42, unknown 117.6
2223 Female, age 72, unknown 114.1
1942 Male, age 51, unknown 113.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.5
Samples: 139

Max nTPM: 175.8
Min nTPM: 36.0
Std nTPM: 21.8
Median nTPM: 68.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 175.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 168.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 128.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 124.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 114.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 112.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 111.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 104.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.1
Pig sample Sample description nTPM
Midbrain
nTPM: 49.7
Samples: 4

Max nTPM: 59.8
Min nTPM: 41.4
Sample A Female 59.8
Sample B Female 51.5
Sample C Male 46.0
Sample D Male 41.4
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 62.7
Min nTPM: 35.5
Sample B Female 46.4
Sample C Male 62.7
Sample D Male 35.5
Substantia nigra
nTPM: 53.1
Samples: 4

Max nTPM: 77.4
Min nTPM: 27.1
Sample A Female 77.4
Sample B Female 49.6
Sample C Male 58.2
Sample D Male 27.1
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 59.0
Min nTPM: 32.5
Sample A Female 59.0
Sample B Female 46.2
Sample C Male 35.4
Sample D Male 32.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 61.3
Min nTPM: 44.1
Sample A Male 61.3
Sample B Male 60.5
Sample C Female 44.1
Sample D Female 56.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1803 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
1802 Antisense, RP_040604_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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