MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:32.1 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:75.9 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.0
2586 Male, age 75, left hemisphere 46.4
2019 Male, age 18, unknown 44.6
2411 Female, age 72, unknown 43.7
2666 Male, age 74, left hemisphere 43.3
2828 Female, age 72, unknown 42.2
1833 Male, age 53, unknown 41.9
1870 Female, age 42, unknown 40.6
1830 Male, age 51, unknown 40.1
2219 Male, age 76, both hemispheres 39.1
1827 Male, age 72, unknown 38.5
Dorsal raphe nucleus
nTPM: 40.4
2750 Male, age 76, both hemispheres 44.3
2298 Female, age 72, unknown 40.5
2047 Male, age 72, unknown 40.3
1828 Male, age 53, unknown 39.8
2016 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 35.7
1890 Male, age 53, unknown 36.9
2097 Female, age 72, unknown 36.1
1848 Female, age 42, unknown 35.4
2849 Male, age 72, unknown 34.3
Median raphe nucleus
nTPM: 40.5
2220 Male, age 76, midline 40.5
Pedunculopontine tegmental nucleus
nTPM: 39.0
2334 Male, age 80, both hemispheres 40.8
1921 Female, age 85, both hemispheres 39.3
2338 Male, age 61, both hemispheres 36.8
Periaquaductal grey, anterior
nTPM: 37.1
1795 Male, age 51, unknown 37.4
1947 Male, age 18, unknown 37.1
2502 Female, age 75, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 35.5
1831 Male, age 72, unknown 38.0
2464 Female, age 72, unknown 37.3
2850 Male, age 76, both hemispheres 34.2
1840 Male, age 53, unknown 32.5
Periaquaductal grey, lateral
nTPM: 34.8
2053 Male, age 18, unknown 36.1
2272 Male, age 74, both hemispheres 35.2
2140 Male, age 76, both hemispheres 33.1
Pretectal area
nTPM: 39.9
1817 Female, age 42, unknown 45.7
1816 Male, age 51, unknown 43.4
1815 Male, age 53, unknown 43.0
1944 Female, age 72, unknown 42.2
2007 Male, age 72, unknown 41.9
2667 Female, age 75, unknown 40.2
2407 Male, age 75, both hemispheres 37.6
2224 Female, age 72, unknown 37.3
2273 Male, age 74, both hemispheres 36.1
2316 Male, age 76, right hemisphere 36.1
2825 Male, age 18, unknown 35.7
Red nucleus
nTPM: 42.5
1904 Male, age 53, unknown 46.3
1821 Female, age 72, unknown 44.4
2785 Male, age 18, unknown 44.4
1865 Male, age 51, unknown 43.7
2503 Female, age 72, unknown 42.2
2769 Male, age 72, unknown 42.2
1954 Female, age 42, unknown 41.8
2227 Male, age 72, unknown 41.6
2588 Male, age 74, left hemisphere 41.5
2823 Male, age 76, right hemisphere 41.4
2584 Male, age 75, left hemisphere 41.3
2725 Female, age 75, unknown 39.2
Substantia nigra
nTPM: 42.6
1916 Female, age 42, unknown 48.2
1851 Male, age 51, unknown 46.9
2409 Female, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 44.2
1889 Female, age 72, unknown 42.7
2699 Male, age 18, unknown 41.4
1941 Male, age 53, unknown 41.1
2241 Male, age 72, unknown 40.6
2590 Female, age 75, unknown 38.6
2665 Male, age 74, both hemispheres 37.9
Superior colliculus
nTPM: 40.6
2668 Female, age 75, unknown 48.1
2087 Female, age 72, unknown 42.9
1995 Male, age 72, unknown 42.8
1913 Female, age 42, unknown 42.4
1796 Male, age 53, unknown 41.3
2261 Male, age 18, unknown 40.0
2587 Male, age 74, left hemisphere 37.7
2664 Male, age 75, both hemispheres 37.3
1895 Male, age 76, right hemisphere 37.0
1839 Male, age 51, unknown 36.4
Ventral tegmental area
nTPM: 42.2
2410 Female, age 72, unknown 47.2
1915 Female, age 42, unknown 43.2
2218 Male, age 76, both hemispheres 42.4
2223 Female, age 72, unknown 42.0
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 39.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 139

Max nTPM: 57.7
Min nTPM: 14.3
Std nTPM: 7.6
Median nTPM: 31.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 47.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 46.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 45.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 44.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.8
FF:10158-103A5 76 years, female 78.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 77.2
Min nTPM: 26.9
Sample A Female 77.2
Sample B Female 29.7
Sample C Male 36.0
Sample D Male 26.9
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 25.4
Min nTPM: 20.7
Sample B Female 25.4
Sample C Male 21.4
Sample D Male 20.7
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 43.2
Min nTPM: 25.3
Sample A Female 42.7
Sample B Female 25.3
Sample C Male 33.5
Sample D Male 43.2
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 47.2
Min nTPM: 32.0
Sample A Female 47.2
Sample B Female 32.0
Sample C Male 41.7
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.9
Samples: 4

Max nTPM: 78.2
Min nTPM: 74.4
Sample A Male 75.0
Sample B Male 75.9
Sample C Female 74.4
Sample D Female 78.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
67881552 Antisense, RP_041018_01_E09, Mouse strain C57BL/6J (56 days, male) 11.1
75694482 Antisense, RP_060518_03_G11, Mouse strain C57BL/6J (56 days, male) 3.3
77413684 Antisense, RP_070205_01_C09, Mouse strain C57BL/6J (56 days, male) 2.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.