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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.7 nTPM
HPA:101.7 nTPM
GTEx:94.9 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:409.1 nTPM
Allen mouse:24.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 101.7
Sample id Sample description nTPM
Amygdala
nTPM: 96.9
2814 Male, age 76, right hemisphere 112.9
2514 Male, age 75, right hemisphere 99.2
2517 Female, age 94, left hemisphere 92.8
1987 Female, age 91, left hemisphere 89.8
2695 Female, age 67, right hemisphere 89.7
Basal amygdala
nTPM: 93.4
2685 Female, age 94, left hemisphere 99.3
1955 Male, age 76, both hemispheres 97.3
2609 Male, age 75, right hemisphere 97.1
2827 Female, age 67, right hemisphere 89.2
2110 Male, age 80, left hemisphere 88.9
2243 Female, age 91, right hemisphere 88.6
Central amygdala
nTPM: 98.8
2826 Female, age 94, left hemisphere 117.6
1905 Male, age 76, both hemispheres 104.6
2515 Male, age 75, right hemisphere 94.2
2239 Male, age 80, left hemisphere 90.8
2701 Female, age 91, right hemisphere 86.8
Corticomedial amygdala
nTPM: 89.0
2829 Male, age 80, left hemisphere 103.5
2428 Male, age 75, right hemisphere 95.2
2429 Female, age 94, left hemisphere 91.9
2535 Female, age 67, right hemisphere 81.5
2242 Female, age 91, right hemisphere 81.4
2240 Male, age 76, both hemispheres 80.5
Lateral amygdala
nTPM: 101.5
2534 Female, age 94, left hemisphere 120.2
1883 Male, age 76, both hemispheres 114.7
2516 Male, age 75, right hemisphere 105.4
2830 Female, age 67, right hemisphere 92.9
2255 Female, age 91, right hemisphere 89.3
2256 Male, age 80, left hemisphere 86.4
Stria terminalis, bed nucleus
nTPM: 101.7
1974 Female, age 91, both hemispheres 117.5
2486 Female, age 94, both hemispheres 104.0
2201 Male, age 74, unknown 83.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 94.9
Samples: 152

Max nTPM: 227.2
Min nTPM: 15.6
Std nTPM: 32.2
Median nTPM: 89.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 227.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 202.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 198.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 190.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 179.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 175.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 152.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 151.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 148.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 148.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 141.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 138.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 137.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 132.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 126.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 124.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 124.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 123.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 122.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 120.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 118.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 117.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 115.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 114.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 112.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 112.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 111.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 111.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 110.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 109.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 108.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 108.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 107.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 106.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 106.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 106.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 104.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 103.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 100.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 100.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 99.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 99.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 99.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 98.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 98.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 98.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 97.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 97.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 94.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 94.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 93.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 92.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 91.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 89.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 89.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 89.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 88.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 87.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 87.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 86.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 85.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 85.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 84.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 84.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 82.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 82.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 82.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 82.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 81.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 81.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 81.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 81.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 77.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 77.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 76.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 75.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 75.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 74.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 73.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 71.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 71.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 71.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 71.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 71.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 70.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 67.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 66.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 65.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 64.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 64.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 63.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 63.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 61.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 61.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 61.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 59.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 57.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 56.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 55.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 55.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 52.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 51.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 39.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.5
FF:10151-102I7 76 years, female 111.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.5
Pig sample Sample description nTPM
Amygdala
nTPM: 68.6
Samples: 4

Max nTPM: 95.3
Min nTPM: 54.3
Sample A Female 95.3
Sample B Female 54.3
Sample C Male 63.8
Sample D Male 60.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 409.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 409.1
Samples: 4

Max nTPM: 421.1
Min nTPM: 402.6
Sample A Male 406.3
Sample B Male 421.1
Sample C Female 402.6
Sample D Female 406.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.0
2033 Antisense, RP_Baylor_102631, Mouse strain C57BL/6J (56 days, male) 24.0
2034 Antisense, RP_Baylor_102631, Mouse strain C57BL/6J (56 days, male) 22.0

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