MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.2 nTPM
HPA:153.2 nTPM
GTEx:125.0 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:98.0 nTPM
Mouse:5.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 149.0
2586 Male, age 75, left hemisphere 165.0
2666 Male, age 74, left hemisphere 154.0
1870 Female, age 42, unknown 151.7
2828 Female, age 72, unknown 148.7
1833 Male, age 53, unknown 148.2
1830 Male, age 51, unknown 147.4
2019 Male, age 18, unknown 145.5
2219 Male, age 76, both hemispheres 143.8
1827 Male, age 72, unknown 143.5
2411 Female, age 72, unknown 142.1
Dorsal raphe nucleus
nTPM: 145.8
1828 Male, age 53, unknown 147.7
2047 Male, age 72, unknown 147.0
2016 Female, age 72, unknown 146.5
2750 Male, age 76, both hemispheres 144.5
2298 Female, age 72, unknown 143.2
Inferior colliculus
nTPM: 144.1
2849 Male, age 72, unknown 147.5
1890 Male, age 53, unknown 146.0
1848 Female, age 42, unknown 144.1
2097 Female, age 72, unknown 138.6
Median raphe nucleus
nTPM: 147.4
2220 Male, age 76, midline 147.4
Pedunculopontine tegmental nucleus
nTPM: 150.1
2338 Male, age 61, both hemispheres 160.3
2334 Male, age 80, both hemispheres 148.4
1921 Female, age 85, both hemispheres 141.6
Periaquaductal grey, anterior
nTPM: 146.3
2502 Female, age 75, unknown 147.0
1947 Male, age 18, unknown 146.8
1795 Male, age 51, unknown 145.1
Periaquaductal grey, dorsal
nTPM: 144.5
2850 Male, age 76, both hemispheres 151.8
1831 Male, age 72, unknown 145.4
1840 Male, age 53, unknown 142.4
2464 Female, age 72, unknown 138.5
Periaquaductal grey, lateral
nTPM: 144.0
2053 Male, age 18, unknown 146.0
2140 Male, age 76, both hemispheres 143.4
2272 Male, age 74, both hemispheres 142.5
Pretectal area
nTPM: 146.3
1817 Female, age 42, unknown 152.4
2407 Male, age 75, both hemispheres 152.2
1944 Female, age 72, unknown 151.3
2007 Male, age 72, unknown 150.1
1815 Male, age 53, unknown 147.6
1816 Male, age 51, unknown 145.8
2667 Female, age 75, unknown 145.5
2825 Male, age 18, unknown 144.1
2224 Female, age 72, unknown 142.8
2273 Male, age 74, both hemispheres 139.8
2316 Male, age 76, right hemisphere 137.5
Red nucleus
nTPM: 151.6
2584 Male, age 75, left hemisphere 160.5
1865 Male, age 51, unknown 157.2
1904 Male, age 53, unknown 153.4
2588 Male, age 74, left hemisphere 152.0
2823 Male, age 76, right hemisphere 151.6
1821 Female, age 72, unknown 150.7
2785 Male, age 18, unknown 150.4
2227 Male, age 72, unknown 150.2
2725 Female, age 75, unknown 149.4
2503 Female, age 72, unknown 149.0
2769 Male, age 72, unknown 148.8
1954 Female, age 42, unknown 145.9
Substantia nigra
nTPM: 153.2
1916 Female, age 42, unknown 159.7
2699 Male, age 18, unknown 158.2
2583 Male, age 75, right hemisphere 157.9
1851 Male, age 51, unknown 157.1
2665 Male, age 74, both hemispheres 154.6
2409 Female, age 72, unknown 152.6
1889 Female, age 72, unknown 148.8
2241 Male, age 72, unknown 148.8
1941 Male, age 53, unknown 147.5
2590 Female, age 75, unknown 147.1
Superior colliculus
nTPM: 148.3
2668 Female, age 75, unknown 155.9
2664 Male, age 75, both hemispheres 154.3
1913 Female, age 42, unknown 151.9
1995 Male, age 72, unknown 149.8
2261 Male, age 18, unknown 146.8
2087 Female, age 72, unknown 146.7
1796 Male, age 53, unknown 146.3
2587 Male, age 74, left hemisphere 146.3
1839 Male, age 51, unknown 142.6
1895 Male, age 76, right hemisphere 142.5
Ventral tegmental area
nTPM: 149.9
2410 Female, age 72, unknown 152.2
2021 Male, age 53, unknown 151.1
1942 Male, age 51, unknown 150.1
1915 Female, age 42, unknown 149.9
2218 Male, age 76, both hemispheres 149.1
2223 Female, age 72, unknown 147.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 125.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125.0
Samples: 139

Max nTPM: 321.8
Min nTPM: 39.0
Std nTPM: 40.5
Median nTPM: 120.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 321.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 266.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 243.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 223.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 205.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 197.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 196.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 194.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 194.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 189.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 182.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.0
Pig sample Sample description nTPM
Midbrain
nTPM: 90.5
Samples: 4

Max nTPM: 105.5
Min nTPM: 79.0
Sample A Female 105.5
Sample B Female 92.9
Sample C Male 84.7
Sample D Male 79.0
Periaqueductal gray
nTPM: 75.4
Samples: 3

Max nTPM: 88.7
Min nTPM: 66.4
Sample B Female 71.2
Sample C Male 88.7
Sample D Male 66.4
Substantia nigra
nTPM: 98.0
Samples: 4

Max nTPM: 127.5
Min nTPM: 75.3
Sample A Female 127.5
Sample B Female 84.0
Sample C Male 105.1
Sample D Male 75.3
Superior colliculi
nTPM: 92.8
Samples: 4

Max nTPM: 119.1
Min nTPM: 79.6
Sample A Female 119.1
Sample B Female 79.6
Sample C Male 85.8
Sample D Male 86.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.5
Sample A Male 5.9
Sample B Male 6.0
Sample C Female 5.5
Sample D Female 5.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.