MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:20.0 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:8.6 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2828 Female, age 72, unknown 34.7
2586 Male, age 75, left hemisphere 32.7
2666 Male, age 74, left hemisphere 27.6
1827 Male, age 72, unknown 24.0
1830 Male, age 51, unknown 21.0
1833 Male, age 53, unknown 18.3
1870 Female, age 42, unknown 16.6
2219 Male, age 76, both hemispheres 16.2
2019 Male, age 18, unknown 12.1
2411 Female, age 72, unknown 11.8
Dorsal raphe nucleus
nTPM: 19.8
1828 Male, age 53, unknown 24.0
2016 Female, age 72, unknown 23.2
2047 Male, age 72, unknown 19.3
2298 Female, age 72, unknown 16.6
2750 Male, age 76, both hemispheres 15.7
Inferior colliculus
nTPM: 20.3
2849 Male, age 72, unknown 24.1
1890 Male, age 53, unknown 22.3
1848 Female, age 42, unknown 20.2
2097 Female, age 72, unknown 14.4
Median raphe nucleus
nTPM: 18.5
2220 Male, age 76, midline 18.5
Pedunculopontine tegmental nucleus
nTPM: 15.6
2338 Male, age 61, both hemispheres 17.7
1921 Female, age 85, both hemispheres 14.8
2334 Male, age 80, both hemispheres 14.4
Periaquaductal grey, anterior
nTPM: 32.6
1947 Male, age 18, unknown 42.2
1795 Male, age 51, unknown 33.0
2502 Female, age 75, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 27.3
2850 Male, age 76, both hemispheres 39.2
1831 Male, age 72, unknown 27.2
1840 Male, age 53, unknown 22.9
2464 Female, age 72, unknown 19.7
Periaquaductal grey, lateral
nTPM: 27.3
2140 Male, age 76, both hemispheres 35.2
2053 Male, age 18, unknown 23.6
2272 Male, age 74, both hemispheres 23.0
Pretectal area
nTPM: 23.2
2316 Male, age 76, right hemisphere 28.8
2667 Female, age 75, unknown 28.2
2407 Male, age 75, both hemispheres 27.2
2825 Male, age 18, unknown 27.1
1816 Male, age 51, unknown 26.4
1944 Female, age 72, unknown 22.7
1817 Female, age 42, unknown 20.6
2273 Male, age 74, both hemispheres 20.2
1815 Male, age 53, unknown 19.9
2224 Female, age 72, unknown 18.4
2007 Male, age 72, unknown 15.6
Red nucleus
nTPM: 20.6
2823 Male, age 76, right hemisphere 33.0
2584 Male, age 75, left hemisphere 25.9
2725 Female, age 75, unknown 23.3
1954 Female, age 42, unknown 22.8
2227 Male, age 72, unknown 21.2
2588 Male, age 74, left hemisphere 20.5
2769 Male, age 72, unknown 20.1
1904 Male, age 53, unknown 20.0
2503 Female, age 72, unknown 16.4
1865 Male, age 51, unknown 15.7
1821 Female, age 72, unknown 15.1
2785 Male, age 18, unknown 12.6
Substantia nigra
nTPM: 18.9
2699 Male, age 18, unknown 25.3
2590 Female, age 75, unknown 24.7
2583 Male, age 75, right hemisphere 24.3
2665 Male, age 74, both hemispheres 22.9
1889 Female, age 72, unknown 17.5
1916 Female, age 42, unknown 17.4
1851 Male, age 51, unknown 16.4
1941 Male, age 53, unknown 15.9
2241 Male, age 72, unknown 15.8
2409 Female, age 72, unknown 9.4
Superior colliculus
nTPM: 22.9
2664 Male, age 75, both hemispheres 33.3
2261 Male, age 18, unknown 27.7
2087 Female, age 72, unknown 25.3
1995 Male, age 72, unknown 25.2
1796 Male, age 53, unknown 25.0
1839 Male, age 51, unknown 21.5
1913 Female, age 42, unknown 20.4
2587 Male, age 74, left hemisphere 17.3
1895 Male, age 76, right hemisphere 16.9
2668 Female, age 75, unknown 16.7
Ventral tegmental area
nTPM: 18.3
2218 Male, age 76, both hemispheres 23.6
1942 Male, age 51, unknown 21.9
2021 Male, age 53, unknown 20.9
1915 Female, age 42, unknown 15.1
2223 Female, age 72, unknown 14.2
2410 Female, age 72, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 58.9
Min nTPM: 5.5
Std nTPM: 9.4
Median nTPM: 18.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 58.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 47.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 42.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 41.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 40.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 40.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.0
Sample A Female 11.9
Sample B Female 10.5
Sample C Male 9.0
Sample D Male 11.2
Periaqueductal gray
nTPM: 13.5
Samples: 3

Max nTPM: 15.5
Min nTPM: 12.0
Sample B Female 13.0
Sample C Male 15.5
Sample D Male 12.0
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.4
Sample A Female 15.5
Sample B Female 15.1
Sample C Male 11.6
Sample D Male 10.4
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 9.8
Sample A Female 14.4
Sample B Female 14.3
Sample C Male 9.8
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 8.9
Min nTPM: 8.4
Sample A Male 8.5
Sample B Male 8.4
Sample C Female 8.8
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76135635 Antisense, RP_060601_01_B01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.