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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:105.5 nTPM
FANTOM5:256.5 Scaled Tags Per Million
Pig:192.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA048321Antibody CAB003843
Glial cells Not detectedLow
Neuronal cells MediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 105.5
Samples: 246

Max nTPM: 377.2
Min nTPM: 6.5
Std nTPM: 68.5
Median nTPM: 93.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 377.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 290.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 276.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 271.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 268.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 267.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 257.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 252.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 245.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 242.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 239.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 234.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 227.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 225.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 217.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 215.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 213.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 212.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 210.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 209.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 206.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 205.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 203.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 202.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 201.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 201.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 199.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 197.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 196.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 186.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 185.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 181.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 179.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 177.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 177.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 176.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 175.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 174.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 173.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 172.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 171.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 170.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 170.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 169.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 168.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 168.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 167.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 166.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 165.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 164.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 164.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 162.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 162.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 156.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 152.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 152.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 152.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 152.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 151.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 150.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 150.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 149.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 149.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 148.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 147.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 146.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 145.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 144.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 144.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 142.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 140.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 139.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 139.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 139.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 137.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 136.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 136.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 135.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 135.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 135.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 134.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 132.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 131.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 131.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 130.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 129.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 129.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 128.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 128.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 127.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 127.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 126.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 126.5
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 123.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 123.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 123.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 123.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 118.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 117.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 113.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 113.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 112.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 112.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 111.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 110.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 109.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 108.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 106.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 106.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 106.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 106.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 102.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 101.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 100.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 100.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 96.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 95.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 93.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 93.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 92.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 90.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 90.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 89.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 89.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 88.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 86.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 86.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 85.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 85.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 84.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 84.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 84.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 83.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 81.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 81.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 81.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 79.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 77.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 76.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 75.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 74.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 73.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 72.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 71.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 71.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 70.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 67.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 66.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 66.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 66.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 66.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 64.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 61.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 59.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 59.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 59.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 58.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 58.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 58.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 58.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 57.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 55.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 55.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 54.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 53.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 52.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 52.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 51.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 50.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 48.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 47.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 47.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 47.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 46.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 46.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 45.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 44.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 42.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 42.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 42.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 41.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 41.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 40.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 40.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 38.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 36.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 36.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 35.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 35.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 35.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 34.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 34.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 33.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 32.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 32.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 31.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 31.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 30.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 30.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 30.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 28.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 28.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 28.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 28.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 26.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 26.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 25.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 25.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 24.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 23.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 23.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 23.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 23.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 22.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 22.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 22.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 21.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 20.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 18.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 17.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 15.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 13.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 9.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 9.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 6.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 256.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 256.5
FF:10164-103B2 76 years, female 256.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 192.3
Pig sample Sample description nTPM
Caudate
nTPM: 192.3
Samples: 4

Max nTPM: 249.2
Min nTPM: 144.8
Sample A Female 144.8
Sample B Female 174.3
Sample C Male 249.2
Sample D Male 201.0

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