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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:24.0 nTPM
GTEx:23.3 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:14.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 24.0
Sample id Sample description nTPM
Putamen
nTPM: 24.0
1838 Male, age 80, right hemisphere 25.8
2489 Female, age 72, unknown 25.8
2482 Female, age 94, left hemisphere 25.1
2647 Male, age 75, left hemisphere 25.0
2466 Female, age 79, unknown 22.5
1937 Female, age 91, right hemisphere 22.2
1829 Male, age 74, unknown 21.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 23.3
Samples: 205

Max nTPM: 41.6
Min nTPM: 11.1
Std nTPM: 4.2
Median nTPM: 22.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 37.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 35.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 34.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 32.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 32.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 32.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 31.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 31.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 30.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 30.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 30.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 30.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 30.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 30.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 29.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 29.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 29.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 29.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 29.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 28.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 28.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 28.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 28.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 28.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 28.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 28.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 27.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 27.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 27.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 27.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 27.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 27.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 27.1
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 27.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 27.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 27.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 26.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 26.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 26.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 26.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 26.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 26.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 26.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 26.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 26.5
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 26.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 26.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 26.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 26.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 26.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 26.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 26.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 25.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 25.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 25.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 25.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 25.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 25.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 25.1
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 25.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 25.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 25.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 24.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 24.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 24.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 24.4
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 24.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 24.4
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 24.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 24.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 24.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 24.2
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 24.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 24.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 24.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 24.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 24.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 23.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 23.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 23.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 23.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 23.5
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 23.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 23.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 23.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 23.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 23.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 23.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 23.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 23.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 23.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 23.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 22.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 22.9
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 22.8
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 22.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 22.8
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 22.7
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 22.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 22.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 22.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 22.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 22.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 22.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 22.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 22.1
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 22.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 22.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 22.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 22.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 22.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 22.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 22.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 22.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 22.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 21.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 21.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 21.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 21.9
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 21.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 21.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 21.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 21.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 21.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 21.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 21.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 21.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 21.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 21.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 21.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 21.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 21.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 21.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 21.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 21.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 21.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 21.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 21.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 21.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 21.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 21.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 21.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 20.9
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 20.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 20.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 20.8
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 20.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 20.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 20.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 20.7
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 20.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 20.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 20.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 20.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 20.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 20.4
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 20.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 20.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 20.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 20.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 20.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 20.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 20.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 20.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 20.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 20.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 20.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 19.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 19.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 19.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 19.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 19.7
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 19.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 19.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 19.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 19.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 19.4
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 19.3
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 19.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 19.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 19.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 19.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 19.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 18.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 18.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 18.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 18.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 18.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 17.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 17.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 17.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 17.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 17.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 17.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 16.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 16.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 16.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 16.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 16.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 13.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 11.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 47.2
FF:10176-103C5 60 years, female 47.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.3
Pig sample Sample description nTPM
Putamen
nTPM: 14.3
Samples: 4

Max nTPM: 18.0
Min nTPM: 9.4
Sample A Female 15.5
Sample B Female 9.4
Sample C Male 18.0
Sample D Male 14.3

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