MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:156.5 nTPM
HPA:156.5 nTPM
GTEx:164.4 nTPM
FANTOM5:103.3 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:18.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.6
1870 Female, age 42, unknown 155.5
2411 Female, age 72, unknown 154.1
2019 Male, age 18, unknown 153.7
1830 Male, age 51, unknown 152.0
2828 Female, age 72, unknown 151.4
1833 Male, age 53, unknown 151.0
2586 Male, age 75, left hemisphere 148.5
2219 Male, age 76, both hemispheres 148.2
1827 Male, age 72, unknown 146.4
2666 Male, age 74, left hemisphere 145.3
Dorsal raphe nucleus
nTPM: 155.0
2298 Female, age 72, unknown 157.7
2750 Male, age 76, both hemispheres 156.4
1828 Male, age 53, unknown 156.1
2047 Male, age 72, unknown 152.5
2016 Female, age 72, unknown 152.4
Inferior colliculus
nTPM: 149.5
2097 Female, age 72, unknown 153.2
1848 Female, age 42, unknown 149.2
1890 Male, age 53, unknown 147.9
2849 Male, age 72, unknown 147.9
Median raphe nucleus
nTPM: 153.5
2220 Male, age 76, midline 153.5
Pedunculopontine tegmental nucleus
nTPM: 152.5
2334 Male, age 80, both hemispheres 158.2
1921 Female, age 85, both hemispheres 150.5
2338 Male, age 61, both hemispheres 148.8
Periaquaductal grey, anterior
nTPM: 151.0
2502 Female, age 75, unknown 154.2
1947 Male, age 18, unknown 151.1
1795 Male, age 51, unknown 147.6
Periaquaductal grey, dorsal
nTPM: 147.3
2850 Male, age 76, both hemispheres 151.5
1840 Male, age 53, unknown 148.2
2464 Female, age 72, unknown 147.0
1831 Male, age 72, unknown 142.5
Periaquaductal grey, lateral
nTPM: 149.6
2272 Male, age 74, both hemispheres 151.8
2140 Male, age 76, both hemispheres 150.0
2053 Male, age 18, unknown 147.2
Pretectal area
nTPM: 149.8
2273 Male, age 74, both hemispheres 155.3
2224 Female, age 72, unknown 154.5
2007 Male, age 72, unknown 152.9
1817 Female, age 42, unknown 152.5
2667 Female, age 75, unknown 151.9
2316 Male, age 76, right hemisphere 148.4
2825 Male, age 18, unknown 148.1
1815 Male, age 53, unknown 147.3
1944 Female, age 72, unknown 146.9
1816 Male, age 51, unknown 145.8
2407 Male, age 75, both hemispheres 144.2
Red nucleus
nTPM: 156.5
2227 Male, age 72, unknown 163.5
2503 Female, age 72, unknown 161.4
2769 Male, age 72, unknown 160.5
1821 Female, age 72, unknown 160.3
1865 Male, age 51, unknown 159.7
1904 Male, age 53, unknown 159.1
2785 Male, age 18, unknown 159.0
1954 Female, age 42, unknown 158.4
2823 Male, age 76, right hemisphere 154.3
2725 Female, age 75, unknown 152.1
2588 Male, age 74, left hemisphere 146.6
2584 Male, age 75, left hemisphere 143.5
Substantia nigra
nTPM: 149.2
1916 Female, age 42, unknown 156.9
1851 Male, age 51, unknown 156.3
2699 Male, age 18, unknown 151.1
1889 Female, age 72, unknown 149.2
1941 Male, age 53, unknown 149.0
2409 Female, age 72, unknown 147.4
2665 Male, age 74, both hemispheres 146.8
2590 Female, age 75, unknown 146.2
2241 Male, age 72, unknown 146.1
2583 Male, age 75, right hemisphere 143.5
Superior colliculus
nTPM: 149.7
1913 Female, age 42, unknown 156.5
1995 Male, age 72, unknown 153.6
1796 Male, age 53, unknown 153.1
2587 Male, age 74, left hemisphere 153.1
2668 Female, age 75, unknown 150.7
1839 Male, age 51, unknown 148.8
1895 Male, age 76, right hemisphere 147.6
2087 Female, age 72, unknown 146.6
2261 Male, age 18, unknown 146.0
2664 Male, age 75, both hemispheres 141.4
Ventral tegmental area
nTPM: 155.9
2410 Female, age 72, unknown 161.1
2223 Female, age 72, unknown 160.7
2218 Male, age 76, both hemispheres 155.4
1915 Female, age 42, unknown 155.2
1942 Male, age 51, unknown 152.2
2021 Male, age 53, unknown 150.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.4
Samples: 139

Max nTPM: 341.5
Min nTPM: 79.2
Std nTPM: 40.0
Median nTPM: 157.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 341.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 298.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 283.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 266.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 252.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 247.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 241.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 231.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 229.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 227.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 226.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.3
FF:10158-103A5 76 years, female 103.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 74.5
Min nTPM: 40.5
Sample A Female 74.5
Sample B Female 49.8
Sample C Male 40.5
Sample D Male 45.6
Periaqueductal gray
nTPM: 41.5
Samples: 3

Max nTPM: 45.6
Min nTPM: 38.8
Sample B Female 38.8
Sample C Male 45.6
Sample D Male 40.2
Substantia nigra
nTPM: 49.1
Samples: 4

Max nTPM: 58.6
Min nTPM: 42.6
Sample A Female 58.6
Sample B Female 42.6
Sample C Male 48.1
Sample D Male 47.2
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 59.6
Min nTPM: 36.3
Sample A Female 59.6
Sample B Female 36.3
Sample C Male 44.7
Sample D Male 45.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 16.5
Sample A Male 21.6
Sample B Male 16.5
Sample C Female 17.3
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69838600 Antisense, RP_050310_02_B08, Mouse strain C57BL/6J (56 days, male) 2.8
74819685 Antisense, RP_060315_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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