MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:137.6 nTPM
HPA:137.6 nTPM
GTEx:89.4 nTPM
FANTOM5:70.0 Scaled Tags Per Million
Mouse:118.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.3
2586 Male, age 75, left hemisphere 129.4
1827 Male, age 72, unknown 127.5
2411 Female, age 72, unknown 123.9
2666 Male, age 74, left hemisphere 120.0
1833 Male, age 53, unknown 119.1
2219 Male, age 76, both hemispheres 118.1
1870 Female, age 42, unknown 115.5
1830 Male, age 51, unknown 112.1
2828 Female, age 72, unknown 111.2
2019 Male, age 18, unknown 106.3
Dorsal raphe nucleus
nTPM: 126.0
2298 Female, age 72, unknown 140.2
2047 Male, age 72, unknown 134.2
2750 Male, age 76, both hemispheres 124.6
2016 Female, age 72, unknown 115.9
1828 Male, age 53, unknown 115.3
Inferior colliculus
nTPM: 121.7
2097 Female, age 72, unknown 130.4
2849 Male, age 72, unknown 126.1
1890 Male, age 53, unknown 116.1
1848 Female, age 42, unknown 114.3
Median raphe nucleus
nTPM: 137.6
2220 Male, age 76, midline 137.6
Pedunculopontine tegmental nucleus
nTPM: 117.6
1921 Female, age 85, both hemispheres 127.6
2334 Male, age 80, both hemispheres 125.0
2338 Male, age 61, both hemispheres 100.1
Periaquaductal grey, anterior
nTPM: 122.8
1947 Male, age 18, unknown 129.1
1795 Male, age 51, unknown 126.6
2502 Female, age 75, unknown 112.8
Periaquaductal grey, dorsal
nTPM: 125.2
1840 Male, age 53, unknown 141.3
2850 Male, age 76, both hemispheres 124.2
2464 Female, age 72, unknown 118.2
1831 Male, age 72, unknown 117.1
Periaquaductal grey, lateral
nTPM: 115.9
2140 Male, age 76, both hemispheres 120.2
2053 Male, age 18, unknown 114.6
2272 Male, age 74, both hemispheres 112.8
Pretectal area
nTPM: 121.4
2224 Female, age 72, unknown 135.2
2825 Male, age 18, unknown 129.1
1816 Male, age 51, unknown 127.5
1817 Female, age 42, unknown 126.9
2007 Male, age 72, unknown 125.4
2667 Female, age 75, unknown 119.8
1944 Female, age 72, unknown 119.4
1815 Male, age 53, unknown 118.6
2407 Male, age 75, both hemispheres 114.1
2316 Male, age 76, right hemisphere 110.0
2273 Male, age 74, both hemispheres 108.8
Red nucleus
nTPM: 104.6
2584 Male, age 75, left hemisphere 119.6
2588 Male, age 74, left hemisphere 110.5
2725 Female, age 75, unknown 109.9
2785 Male, age 18, unknown 108.2
1821 Female, age 72, unknown 105.8
2227 Male, age 72, unknown 102.8
2769 Male, age 72, unknown 102.0
1954 Female, age 42, unknown 101.5
2823 Male, age 76, right hemisphere 100.1
2503 Female, age 72, unknown 99.6
1904 Male, age 53, unknown 99.5
1865 Male, age 51, unknown 95.2
Substantia nigra
nTPM: 118.2
2665 Male, age 74, both hemispheres 125.9
2241 Male, age 72, unknown 122.5
1916 Female, age 42, unknown 121.5
1889 Female, age 72, unknown 119.7
1851 Male, age 51, unknown 119.5
1941 Male, age 53, unknown 119.5
2583 Male, age 75, right hemisphere 117.9
2590 Female, age 75, unknown 115.4
2699 Male, age 18, unknown 113.7
2409 Female, age 72, unknown 106.5
Superior colliculus
nTPM: 114.0
2664 Male, age 75, both hemispheres 125.1
1839 Male, age 51, unknown 121.4
2668 Female, age 75, unknown 119.7
1796 Male, age 53, unknown 119.5
2087 Female, age 72, unknown 116.4
1895 Male, age 76, right hemisphere 115.4
2261 Male, age 18, unknown 113.6
2587 Male, age 74, left hemisphere 109.7
1913 Female, age 42, unknown 100.0
1995 Male, age 72, unknown 99.3
Ventral tegmental area
nTPM: 120.2
2218 Male, age 76, both hemispheres 122.3
1915 Female, age 42, unknown 121.7
2410 Female, age 72, unknown 121.7
2021 Male, age 53, unknown 121.2
1942 Male, age 51, unknown 119.5
2223 Female, age 72, unknown 115.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 89.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 89.4
Samples: 139

Max nTPM: 199.1
Min nTPM: 45.5
Std nTPM: 29.2
Median nTPM: 86.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 199.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 177.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 161.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 160.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 151.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 143.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 142.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 138.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 137.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 135.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 131.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.0
FF:10158-103A5 76 years, female 70.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 118.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 118.0
Samples: 4

Max nTPM: 120.8
Min nTPM: 114.9
Sample A Male 115.7
Sample B Male 120.4
Sample C Female 114.9
Sample D Female 120.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
71016617 Antisense, RP_050725_03_A07, Mouse strain C57BL/6J (56 days, male) 4.6
68637575 Antisense, RP_050126_01_B08, Mouse strain C57BL/6J (56 days, male) 4.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.