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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:52.9 nTPM
HPA:52.9 nTPM
FANTOM5:171.9 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:67.5 nTPM

THALAMUS - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 42.1
2497 Male, age 66, unknown 45.2
2032 Female, age 42, unknown 43.8
2396 Male, age 61, right hemisphere 37.5
Centromedial thalamic nucleus
nTPM: 42.5
2401 Male, age 76, right hemisphere 47.6
2279 Female, age 85, left hemisphere 37.5
Habenula
nTPM: 50.9
1957 Male, age 80, both hemispheres 57.3
2252 Male, age 62, unknown 49.2
2203 Male, age 61, left hemisphere 49.1
2276 Male, age 66, unknown 48.0
Lateral geniculate body
nTPM: 47.9
2857 Male, age 74, right hemisphere 57.0
2575 Female, age 94, right hemisphere 53.1
2399 Male, age 61, left hemisphere 50.1
2659 Male, age 66, unknown 46.8
2035 Female, age 72, unknown 46.0
1953 Male, age 62, unknown 45.2
2841 Male, age 80, both hemispheres 42.8
2106 Female, age 67, right hemisphere 42.5
Lateral thalamic nuclei
nTPM: 48.5
2661 Female, age 72, unknown 49.9
2573 Female, age 94, left hemisphere 49.3
2577 Male, age 74, both hemispheres 49.3
1903 Male, age 76, left hemisphere 47.8
2765 Female, age 67, both hemispheres 46.4
Medial dorsal thalamic nucleus
nTPM: 49.6
2572 Female, age 94, right hemisphere 62.1
2498 Male, age 66, unknown 53.1
1810 Male, age 48, unknown 52.0
2576 Male, age 74, both hemispheres 51.5
2492 Male, age 75, right hemisphere 51.4
2026 Male, age 62, unknown 50.0
1859 Male, age 76, both hemispheres 49.1
1930 Female, age 42, unknown 48.0
2283 Male, age 80, right hemisphere 47.2
2402 Female, age 67, both hemispheres 47.0
2039 Female, age 72, unknown 46.0
1971 Male, age 61, right hemisphere 45.1
2660 Female, age 72, unknown 42.7
Medial geniculate body
nTPM: 50.3
2571 Male, age 75, right hemisphere 56.0
1811 Female, age 42, unknown 54.6
2650 Female, age 94, left hemisphere 53.5
2657 Male, age 74, right hemisphere 48.1
2207 Male, age 80, right hemisphere 47.9
2217 Female, age 72, unknown 47.9
2049 Male, age 76, both hemispheres 44.0
Nucleus reuniens
nTPM: 40.8
2205 Male, age 80, left hemisphere 44.0
2212 Female, age 67, left hemisphere 41.0
2210 Female, age 85, left hemisphere 37.4
Nucleus rhomboideus
nTPM: 44.1
2206 Male, age 80, both hemispheres 50.0
2213 Female, age 67, left hemisphere 45.6
2280 Female, age 85, left hemisphere 36.5
Posterior thalamic nucleus
nTPM: 52.9
2649 Female, age 94, both hemispheres 72.1
2655 Male, age 74, right hemisphere 58.1
2495 Female, age 67, right hemisphere 42.9
2266 Male, age 76, right hemisphere 38.4
Pulvinar
nTPM: 48.7
2724 Male, age 74, right hemisphere 57.0
2499 Male, age 66, unknown 52.9
1932 Male, age 80, right hemisphere 51.9
2398 Male, age 61, left hemisphere 49.2
2582 Female, age 72, unknown 48.1
1899 Female, age 42, unknown 47.5
1929 Male, age 48, unknown 47.5
2214 Male, age 76, right hemisphere 45.8
2496 Female, age 67, right hemisphere 43.8
1972 Male, age 62, unknown 43.3
Subthalamic nucleus
nTPM: 39.2
2282 Male, age 61, both hemispheres 43.2
2275 Male, age 66, unknown 42.3
2406 Female, age 72, unknown 41.6
2658 Male, age 74, both hemispheres 40.3
2124 Male, age 62, unknown 38.2
2216 Male, age 48, unknown 37.0
2779 Female, age 42, unknown 35.9
2056 Female, age 72, unknown 35.2
Ventral posterolateral thalamic nucleus
nTPM: 44.8
2197 Male, age 80, both hemispheres 51.0
2570 Male, age 75, right hemisphere 50.6
2578 Male, age 74, both hemispheres 45.2
2397 Male, age 61, right hemisphere 42.3
2581 Female, age 72, unknown 41.5
2740 Male, age 76, right hemisphere 38.2
Ventral posteromedial thalamic nucleus
nTPM: 48.3
2653 Male, age 74, both hemispheres 51.7
2202 Male, age 61, left hemisphere 49.5
2758 Male, age 80, both hemispheres 48.7
2281 Male, age 75, right hemisphere 48.2
2127 Male, age 76, right hemisphere 43.6
Ventral thalamic nuclei
nTPM: 47.1
2580 Male, age 66, unknown 50.1
2204 Male, age 80, both hemispheres 49.8
1845 Male, age 48, unknown 48.3
2652 Male, age 74, left hemisphere 47.2
1860 Male, age 76, both hemispheres 47.0
2285 Male, age 62, unknown 46.8
1912 Female, age 42, unknown 46.4
2858 Female, age 72, unknown 44.3
2291 Female, age 72, unknown 44.2
Ventromedial nucleus
nTPM: 46.3
1822 Female, age 42, unknown 48.0
1982 Female, age 72, unknown 44.5
Zona incerta
nTPM: 40.4
2208 Male, age 80, right hemisphere 46.5
2663 Female, age 72, unknown 41.3
2403 Male, age 62, unknown 39.8
2822 Male, age 74, right hemisphere 37.9
2215 Male, age 66, unknown 36.6

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 171.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 171.9
FF:10154-103A1 76 years, female 171.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.0
Pig sample Sample description nTPM
Thalamus
nTPM: 52.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 39.6
Sample A Female 62.0
Sample B Female 48.6
Sample C Male 57.9
Sample D Male 39.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 67.5
Samples: 4

Max nTPM: 78.2
Min nTPM: 53.1
Sample A Male 65.1
Sample B Male 78.2
Sample C Female 53.1
Sample D Female 73.5

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