MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:241.4 nTPM
HPA:241.4 nTPM
GTEx:166.3 nTPM
FANTOM5:271.9 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:179.2 nTPM
Allen mouse:10.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 241.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 228.0
1870 Female, age 42, unknown 239.5
2411 Female, age 72, unknown 234.6
1827 Male, age 72, unknown 230.1
2019 Male, age 18, unknown 230.1
1830 Male, age 51, unknown 229.9
1833 Male, age 53, unknown 229.9
2828 Female, age 72, unknown 229.1
2219 Male, age 76, both hemispheres 226.6
2666 Male, age 74, left hemisphere 220.5
2586 Male, age 75, left hemisphere 209.3
Dorsal raphe nucleus
nTPM: 234.8
2298 Female, age 72, unknown 244.6
2750 Male, age 76, both hemispheres 236.8
2016 Female, age 72, unknown 233.7
1828 Male, age 53, unknown 231.4
2047 Male, age 72, unknown 227.5
Inferior colliculus
nTPM: 227.9
2097 Female, age 72, unknown 233.9
1890 Male, age 53, unknown 228.0
1848 Female, age 42, unknown 226.1
2849 Male, age 72, unknown 223.7
Median raphe nucleus
nTPM: 239.9
2220 Male, age 76, midline 239.9
Pedunculopontine tegmental nucleus
nTPM: 241.4
2338 Male, age 61, both hemispheres 253.4
2334 Male, age 80, both hemispheres 239.8
1921 Female, age 85, both hemispheres 230.9
Periaquaductal grey, anterior
nTPM: 233.3
1947 Male, age 18, unknown 235.9
2502 Female, age 75, unknown 233.1
1795 Male, age 51, unknown 230.8
Periaquaductal grey, dorsal
nTPM: 231.9
2850 Male, age 76, both hemispheres 250.0
1840 Male, age 53, unknown 230.3
1831 Male, age 72, unknown 225.6
2464 Female, age 72, unknown 221.9
Periaquaductal grey, lateral
nTPM: 239.4
2272 Male, age 74, both hemispheres 246.7
2140 Male, age 76, both hemispheres 241.2
2053 Male, age 18, unknown 230.3
Pretectal area
nTPM: 234.5
2273 Male, age 74, both hemispheres 252.6
2667 Female, age 75, unknown 240.4
2224 Female, age 72, unknown 240.3
1817 Female, age 42, unknown 234.4
1815 Male, age 53, unknown 232.7
2407 Male, age 75, both hemispheres 232.4
2825 Male, age 18, unknown 231.7
2007 Male, age 72, unknown 230.5
1944 Female, age 72, unknown 230.3
2316 Male, age 76, right hemisphere 227.3
1816 Male, age 51, unknown 226.4
Red nucleus
nTPM: 233.0
1865 Male, age 51, unknown 242.2
1904 Male, age 53, unknown 239.5
1954 Female, age 42, unknown 238.8
1821 Female, age 72, unknown 238.7
2503 Female, age 72, unknown 236.2
2785 Male, age 18, unknown 235.5
2725 Female, age 75, unknown 234.7
2769 Male, age 72, unknown 233.4
2227 Male, age 72, unknown 233.2
2823 Male, age 76, right hemisphere 232.4
2584 Male, age 75, left hemisphere 216.3
2588 Male, age 74, left hemisphere 214.8
Substantia nigra
nTPM: 232.2
1916 Female, age 42, unknown 240.8
2241 Male, age 72, unknown 238.1
2409 Female, age 72, unknown 237.2
1851 Male, age 51, unknown 236.4
1889 Female, age 72, unknown 234.9
2699 Male, age 18, unknown 234.9
1941 Male, age 53, unknown 228.1
2590 Female, age 75, unknown 227.6
2665 Male, age 74, both hemispheres 225.0
2583 Male, age 75, right hemisphere 218.6
Superior colliculus
nTPM: 228.2
2587 Male, age 74, left hemisphere 237.3
1995 Male, age 72, unknown 236.6
1913 Female, age 42, unknown 236.1
1796 Male, age 53, unknown 229.4
2087 Female, age 72, unknown 227.6
1895 Male, age 76, right hemisphere 227.5
2261 Male, age 18, unknown 225.8
2668 Female, age 75, unknown 224.1
1839 Male, age 51, unknown 223.9
2664 Male, age 75, both hemispheres 214.0
Ventral tegmental area
nTPM: 233.0
1915 Female, age 42, unknown 239.4
2410 Female, age 72, unknown 235.3
2218 Male, age 76, both hemispheres 232.0
2223 Female, age 72, unknown 231.6
1942 Male, age 51, unknown 230.6
2021 Male, age 53, unknown 228.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 166.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.3
Samples: 139

Max nTPM: 319.0
Min nTPM: 91.5
Std nTPM: 46.6
Median nTPM: 150.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 319.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 310.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 300.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 292.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 282.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 272.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 271.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 266.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 256.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 254.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 253.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 271.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 271.9
FF:10158-103A5 76 years, female 271.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.7
Sample A Female 20.9
Sample B Female 15.7
Sample C Male 13.7
Sample D Male 12.7
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 15.1
Min nTPM: 12.3
Sample B Female 15.1
Sample C Male 13.4
Sample D Male 12.3
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 17.9
Min nTPM: 14.0
Sample A Female 17.1
Sample B Female 14.0
Sample C Male 15.0
Sample D Male 17.9
Superior colliculi
nTPM: 14.7
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.6
Sample A Female 15.7
Sample B Female 13.6
Sample C Male 14.9
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.2
Samples: 4

Max nTPM: 188.9
Min nTPM: 169.1
Sample A Male 181.7
Sample B Male 169.1
Sample C Female 177.0
Sample D Female 188.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.1
74580984 Antisense, RP_060215_02_C08, Mouse strain C57BL/6J (56 days, male) 10.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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