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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:151.5 nTPM
HPA:151.5 nTPM
GTEx:164.6 nTPM
FANTOM5:241.6 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:28.8 nTPM
Allen mouse:3.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 151.5
Sample id Sample description nTPM
Amygdala
nTPM: 131.2
2514 Male, age 75, right hemisphere 142.4
1987 Female, age 91, left hemisphere 140.4
2814 Male, age 76, right hemisphere 133.3
2517 Female, age 94, left hemisphere 125.7
2695 Female, age 67, right hemisphere 114.3
Basal amygdala
nTPM: 125.6
2110 Male, age 80, left hemisphere 137.4
2243 Female, age 91, right hemisphere 132.4
2609 Male, age 75, right hemisphere 128.9
1955 Male, age 76, both hemispheres 127.4
2685 Female, age 94, left hemisphere 118.6
2827 Female, age 67, right hemisphere 109.1
Central amygdala
nTPM: 129.3
2239 Male, age 80, left hemisphere 137.7
2701 Female, age 91, right hemisphere 129.7
2515 Male, age 75, right hemisphere 129.6
1905 Male, age 76, both hemispheres 128.5
2826 Female, age 94, left hemisphere 120.7
Corticomedial amygdala
nTPM: 130.6
2829 Male, age 80, left hemisphere 142.3
2242 Female, age 91, right hemisphere 135.3
2240 Male, age 76, both hemispheres 130.8
2429 Female, age 94, left hemisphere 129.2
2428 Male, age 75, right hemisphere 128.0
2535 Female, age 67, right hemisphere 117.7
Lateral amygdala
nTPM: 125.2
2516 Male, age 75, right hemisphere 133.5
2534 Female, age 94, left hemisphere 132.1
2255 Female, age 91, right hemisphere 131.1
1883 Male, age 76, both hemispheres 127.5
2256 Male, age 80, left hemisphere 119.4
2830 Female, age 67, right hemisphere 107.7
Stria terminalis, bed nucleus
nTPM: 151.5
1974 Female, age 91, both hemispheres 158.7
2201 Male, age 74, unknown 151.1
2486 Female, age 94, both hemispheres 144.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 164.6
Samples: 152

Max nTPM: 318.4
Min nTPM: 69.1
Std nTPM: 45.3
Median nTPM: 157.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 318.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 313.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 280.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 278.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 272.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 272.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 259.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 251.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 249.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 237.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 231.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 229.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 228.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 227.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 225.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 223.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 218.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 214.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 213.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 211.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 208.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 208.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 207.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 206.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 204.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 203.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 202.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 201.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 198.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 197.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 197.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 197.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 196.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 195.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 194.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 193.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 193.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 189.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 189.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 188.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 186.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 186.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 184.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 184.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 182.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 182.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 179.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 179.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 178.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 176.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 175.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 175.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 174.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 174.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 174.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 173.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 172.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 172.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 171.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 170.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 169.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 168.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 167.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 167.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 164.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 164.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 163.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 160.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 159.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 159.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 159.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 157.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 157.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 156.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 156.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 154.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 153.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 152.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 151.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 150.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 149.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 149.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 146.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 145.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 145.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 144.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 144.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 144.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 143.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 142.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 141.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 141.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 138.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 137.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 137.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 134.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 133.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 132.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 131.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 130.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 129.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 129.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 126.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 123.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 120.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 119.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 119.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 117.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 117.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 116.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 116.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 114.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 114.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 110.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 109.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 105.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 103.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 103.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 103.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 103.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 100.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 96.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 93.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 83.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 69.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 241.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.6
FF:10151-102I7 76 years, female 241.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.3
Pig sample Sample description nTPM
Amygdala
nTPM: 37.3
Samples: 4

Max nTPM: 48.2
Min nTPM: 32.1
Sample A Female 48.2
Sample B Female 32.1
Sample C Male 32.4
Sample D Male 36.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.8
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.3
Sample A Male 32.3
Sample B Male 29.2
Sample C Female 26.3
Sample D Female 27.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.9
100144105 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 3.9
112196711 Antisense, RP_110421_01_D11, Mouse strain C57BL/6J (56 days, male) 2.7

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