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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:250.5 nTPM
HPA:250.5 nTPM
GTEx:82.3 nTPM
FANTOM5:312.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB072806
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 250.5
overview
Male, age 65
Small intestine sample 232
nTPM: 275.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 293.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 223.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 210.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 82.3
Samples: 187

Max nTPM: 267.6
Min nTPM: 0.0
Std nTPM: 80.7
Median nTPM: 54.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 267.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 263.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 262.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 254.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 252.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 248.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 243.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 239.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 237.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 234.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 230.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 226.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 221.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 219.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 218.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 216.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 215.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 213.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 211.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 209.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 209.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 208.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 207.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 206.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 202.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 201.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 198.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 191.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 188.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 188.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 185.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 184.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 182.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 182.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 181.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 168.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 166.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 166.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 165.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 157.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 157.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 155.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 152.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 149.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 148.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 147.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 146.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 143.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 140.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 138.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 137.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 136.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 136.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 135.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 133.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 131.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 127.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 126.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 120.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 119.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 116.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 116.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 115.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 113.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 112.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 110.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 108.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 104.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 102.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 96.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 95.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 92.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 89.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 88.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 83.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 79.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 78.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 76.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 75.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 67.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 67.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 64.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 64.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 63.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 62.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 61.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 61.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 61.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 61.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 60.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 59.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 56.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 55.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 54.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 52.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 51.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 50.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 49.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 46.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 46.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 44.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 42.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 42.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 41.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 40.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 36.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 35.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 34.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 33.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 32.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 31.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 30.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 28.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 27.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 26.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 26.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 24.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 24.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 24.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 23.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 23.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 23.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 21.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 18.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 16.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 16.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 14.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 14.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 13.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 13.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 13.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 12.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 12.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 11.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 11.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 10.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 10.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 9.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 8.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 6.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 6.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 6.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 5.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 4.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 4.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.0
GTEX-1192X-2526-SM-59868 50-59 years, male 2.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 312.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 312.3
FF:10024-101D6 15,40,85 years, mixed 312.3

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