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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:313.2 nTPM
GTEx:313.2 nTPM
FANTOM5:87.9 Scaled Tags Per Million
Pig:155.7 nTPM
Mouse:611.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 313.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 313.2
Samples: 105

Max nTPM: 520.4
Min nTPM: 189.8
Std nTPM: 54.2
Median nTPM:
495_1 57 years, female 520.4
322_1 76 years, male 419.2
162_1 79 years, female 415.9
2_1 77 years, female 410.3
490_1 67 years, female 404.1
316_1 62 years, male 400.3
415_1 77 years, female 390.5
491_1 89 years, female 390.5
307_1 66 years, female 388.0
466_1 57 years, female 387.4
217_1 76 years, male 384.0
139_1 64 years, female 381.5
229_1 69 years, female 378.5
237_1 82 years, male 374.8
117_1 61 years, male 373.2
266_1 85 years, male 372.4
43_1 64 years, female 367.4
447_1 81 years, male 365.4
35_1 74 years, female 359.0
6_1 73 years, female 358.5
468_1 89 years, male 357.6
518_1 75 years, female 357.5
126_1 63 years, male 356.9
414_1 84 years, female 352.7
526_1 61 years, male 351.5
311_1 78 years, male 350.4
425_1 59 years, female 348.7
149_1 88 years, male 344.7
405_1 91 years, male 341.9
348_1 84 years, male 341.7
389_1 86 years, female 341.0
246_1 77 years, male 340.7
321_1 62 years, female 340.3
81_1 67 years, male 340.1
499_1 55 years, female 333.8
375_1 74 years, female 332.6
352_1 62 years, male 332.0
347_1 72 years, male 330.9
413_1 59 years, female 326.3
251_1 78 years, male 325.8
172_1 72 years, female 324.1
142_1 61 years, female 323.8
32_1 67 years, male 317.8
324_1 76 years, male 317.3
335_1 73 years, female 317.2
137_1 83 years, male 316.8
406_1 79 years, male 315.0
153_1 70 years, female 314.2
480_1 63 years, male 313.6
350_1 84 years, female 313.5
286_1 68 years, female 310.2
89_1 63 years, male 309.6
145_1 84 years, male 308.7
189_1 76 years, male 307.0
218_1 71 years, female 306.7
115_1 83 years, male 306.5
265_1 87 years, male 305.2
396_1 62 years, male 304.5
243_1 75 years, male 304.3
9_1 66 years, female 304.2
308_1 70 years, female 301.4
18_1 88 years, male 300.0
503_1 68 years, male 297.6
313_1 79 years, female 296.4
315_1 62 years, female 295.6
386_1 76 years, male 294.6
291_1 76 years, male 293.4
517_1 88 years, male 291.8
355_1 70 years, female 291.3
119_1 70 years, female 290.8
293_1 68 years, female 286.7
318_1 68 years, male 286.4
254_1 77 years, female 282.6
163_1 78 years, male 282.1
292_1 71 years, male 282.0
394_1 75 years, female 281.1
404_1 82 years, female 280.8
377_1 82 years, female 280.2
376_1 75 years, female 280.1
17_1 71 years, male 279.8
384_1 83 years, male 278.6
317_1 60 years, male 277.0
319_1 81 years, male 275.2
177_1 74 years, male 274.9
354_1 81 years, female 274.3
42_1 85 years, male 272.5
314_1 67 years, male 270.1
379_1 60 years, male 269.6
173_1 67 years, male 268.0
288_1 66 years, female 266.1
109_1 81 years, female 263.8
120_1 70 years, female 263.6
349_1 83 years, male 263.0
320_1 89 years, female 257.3
501_1 88 years, male 254.7
99_1 64 years, male 239.0
264_1 73 years, female 237.9
4_1 88 years, female 232.6
41_1 94 years, female 226.9
353_1 82 years, female 222.1
351_1 91 years, male 219.2
356_1 87 years, female 202.6
295_1 61 years, female 195.8
452_1 88 years, female 191.6
506_1 65 years, male 189.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 87.9
FF:10030-101E3 24-65 years, mixed 87.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 155.7
Pig sample Sample description nTPM
Retina
nTPM: 155.7
Samples: 4

Max nTPM: 175.3
Min nTPM: 146.4
Sample A Female 148.6
Sample B Female 146.4
Sample C Male 175.3
Sample D Male 152.6

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 611.0
Mouse sample Sample description nTPM
Retina
nTPM: 611.0
Samples: 4

Max nTPM: 630.3
Min nTPM: 567.7
Sample A Male 630.3
Sample B Male 626.5
Sample C Female 567.7
Sample D Female 619.4

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by the Knut & Alice Wallenberg Foundation.