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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:174.1 nTPM
HPA:174.1 nTPM
GTEx:106.4 nTPM
FANTOM5:158.3 Scaled Tags Per Million
Pig:192.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 174.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 150.5
2194 Female, age 79, both hemispheres 161.5
1981 Female, age 72, midline 161.2
2048 Male, age 55, midline 146.0
2816 Male, age 47, midline 144.7
2565 Male, age 75, midline 138.8
Cervical spinal cord, dorsal horn
nTPM: 174.1
2297 Male, age 75, both hemispheres 192.2
2069 Male, age 47, both hemispheres 182.8
2296 Male, age 66, both hemispheres 176.5
2173 Female, age 72, unknown 171.5
1877 Male, age 55, unknown 163.6
2721 Male, age 90, both hemispheres 158.0
Cervical spinal cord, ventral horn
nTPM: 156.1
2480 Male, age 75, both hemispheres 167.6
2068 Male, age 55, unknown 159.1
2295 Male, age 66, both hemispheres 154.7
2809 Male, age 90, both hemispheres 152.2
2098 Female, age 72, unknown 152.0
2820 Female, age 79, both hemispheres 150.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 106.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.4
Samples: 159

Max nTPM: 181.5
Min nTPM: 72.1
Std nTPM: 17.0
Median nTPM: 104.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 181.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 177.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 160.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 158.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 149.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 145.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 134.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 133.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 132.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 131.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 130.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 130.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 129.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 128.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 127.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 126.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 125.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 123.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 122.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 122.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 122.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 121.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 120.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 120.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 120.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 118.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 118.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 118.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 116.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 115.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 115.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 115.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 115.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 114.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 114.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 114.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 113.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 113.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 112.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 112.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 111.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 111.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 111.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 111.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 111.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 111.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 110.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 110.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 110.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 110.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 109.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 109.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 109.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 109.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 109.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 109.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 109.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 108.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 107.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 106.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 106.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 106.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 106.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 105.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 105.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 105.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 105.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 105.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 105.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 105.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 105.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 105.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 104.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 104.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 104.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 104.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 104.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 104.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 104.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 104.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 103.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 103.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 103.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 102.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 102.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 102.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 101.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 101.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 101.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 101.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 101.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 101.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 100.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 100.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 100.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 99.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 99.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 99.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 98.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 97.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 97.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 96.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 96.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 95.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 95.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 95.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 95.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 94.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 94.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 94.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 94.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 93.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 93.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 93.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 92.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 92.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 92.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 92.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 91.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 91.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 91.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 90.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 89.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 89.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 89.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 89.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 88.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 87.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 87.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 87.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 86.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 86.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 86.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 85.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 84.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 84.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 79.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 76.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 76.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 72.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 158.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 158.3
FF:10181-103D1 60 years, female 179.5
FF:10159-103A6 76 years, female 137.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 192.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 190.6
Samples: 4

Max nTPM: 212.8
Min nTPM: 173.4
Sample A Female 212.8
Sample B Female 176.6
Sample C Male 173.4
Sample D Male 199.4
Ventral spinal cord
nTPM: 192.3
Samples: 4

Max nTPM: 193.4
Min nTPM: 191.0
Sample A Female 193.3
Sample B Female 193.4
Sample C Male 191.0
Sample D Male 191.5

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