MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:118.3 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:94.2 nTPM
Mouse:362.7 nTPM
Allen mouse:22.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.5
2411 Female, age 72, unknown 56.0
2219 Male, age 76, both hemispheres 53.2
1870 Female, age 42, unknown 45.2
1827 Male, age 72, unknown 43.0
1830 Male, age 51, unknown 42.3
2828 Female, age 72, unknown 40.9
2019 Male, age 18, unknown 40.3
2666 Male, age 74, left hemisphere 40.0
1833 Male, age 53, unknown 39.8
2586 Male, age 75, left hemisphere 34.8
Dorsal raphe nucleus
nTPM: 44.0
2298 Female, age 72, unknown 48.9
2047 Male, age 72, unknown 45.7
1828 Male, age 53, unknown 42.8
2750 Male, age 76, both hemispheres 42.6
2016 Female, age 72, unknown 39.8
Inferior colliculus
nTPM: 47.4
2097 Female, age 72, unknown 51.8
1848 Female, age 42, unknown 50.3
2849 Male, age 72, unknown 44.4
1890 Male, age 53, unknown 42.9
Median raphe nucleus
nTPM: 46.8
2220 Male, age 76, midline 46.8
Pedunculopontine tegmental nucleus
nTPM: 44.3
2334 Male, age 80, both hemispheres 47.2
1921 Female, age 85, both hemispheres 47.1
2338 Male, age 61, both hemispheres 38.8
Periaquaductal grey, anterior
nTPM: 42.1
1947 Male, age 18, unknown 42.8
2502 Female, age 75, unknown 42.7
1795 Male, age 51, unknown 40.8
Periaquaductal grey, dorsal
nTPM: 44.6
2464 Female, age 72, unknown 49.3
1840 Male, age 53, unknown 47.9
2850 Male, age 76, both hemispheres 42.4
1831 Male, age 72, unknown 38.6
Periaquaductal grey, lateral
nTPM: 45.3
2272 Male, age 74, both hemispheres 48.7
2053 Male, age 18, unknown 44.8
2140 Male, age 76, both hemispheres 42.2
Pretectal area
nTPM: 45.1
2224 Female, age 72, unknown 52.8
1817 Female, age 42, unknown 48.7
1944 Female, age 72, unknown 48.1
2667 Female, age 75, unknown 46.7
2273 Male, age 74, both hemispheres 46.2
1816 Male, age 51, unknown 45.2
2007 Male, age 72, unknown 44.3
1815 Male, age 53, unknown 43.2
2825 Male, age 18, unknown 43.2
2407 Male, age 75, both hemispheres 41.2
2316 Male, age 76, right hemisphere 36.5
Red nucleus
nTPM: 39.9
2584 Male, age 75, left hemisphere 43.6
1821 Female, age 72, unknown 42.8
1954 Female, age 42, unknown 42.7
1865 Male, age 51, unknown 41.8
2785 Male, age 18, unknown 40.8
2725 Female, age 75, unknown 40.2
2769 Male, age 72, unknown 39.2
1904 Male, age 53, unknown 38.9
2227 Male, age 72, unknown 38.5
2503 Female, age 72, unknown 38.3
2823 Male, age 76, right hemisphere 37.5
2588 Male, age 74, left hemisphere 34.9
Substantia nigra
nTPM: 46.2
2241 Male, age 72, unknown 61.8
2409 Female, age 72, unknown 50.8
1941 Male, age 53, unknown 49.5
1916 Female, age 42, unknown 46.9
1889 Female, age 72, unknown 46.7
1851 Male, age 51, unknown 46.6
2699 Male, age 18, unknown 42.5
2583 Male, age 75, right hemisphere 40.3
2590 Female, age 75, unknown 40.2
2665 Male, age 74, both hemispheres 36.2
Superior colliculus
nTPM: 42.9
2261 Male, age 18, unknown 46.8
2087 Female, age 72, unknown 46.5
1895 Male, age 76, right hemisphere 46.1
2668 Female, age 75, unknown 44.0
1839 Male, age 51, unknown 42.9
2587 Male, age 74, left hemisphere 42.9
1913 Female, age 42, unknown 42.3
1796 Male, age 53, unknown 41.2
1995 Male, age 72, unknown 40.7
2664 Male, age 75, both hemispheres 35.4
Ventral tegmental area
nTPM: 48.3
2410 Female, age 72, unknown 55.7
2021 Male, age 53, unknown 54.1
1915 Female, age 42, unknown 49.8
2223 Female, age 72, unknown 43.8
1942 Male, age 51, unknown 43.5
2218 Male, age 76, both hemispheres 42.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 118.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118.3
Samples: 139

Max nTPM: 362.2
Min nTPM: 11.2
Std nTPM: 65.9
Median nTPM: 107.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 362.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 343.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 313.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 268.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 256.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 249.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 241.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 236.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 231.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 223.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 218.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.9
FF:10158-103A5 76 years, female 97.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.2
Pig sample Sample description nTPM
Midbrain
nTPM: 90.7
Samples: 4

Max nTPM: 131.5
Min nTPM: 53.1
Sample A Female 53.1
Sample B Female 60.4
Sample C Male 131.5
Sample D Male 117.8
Periaqueductal gray
nTPM: 63.3
Samples: 3

Max nTPM: 79.3
Min nTPM: 54.2
Sample B Female 54.2
Sample C Male 79.3
Sample D Male 56.5
Substantia nigra
nTPM: 68.0
Samples: 4

Max nTPM: 104.3
Min nTPM: 21.7
Sample A Female 104.3
Sample B Female 53.6
Sample C Male 92.5
Sample D Male 21.7
Superior colliculi
nTPM: 94.2
Samples: 4

Max nTPM: 123.4
Min nTPM: 69.8
Sample A Female 105.7
Sample B Female 69.8
Sample C Male 123.4
Sample D Male 77.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 362.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 362.7
Samples: 4

Max nTPM: 382.4
Min nTPM: 349.3
Sample A Male 382.4
Sample B Male 368.5
Sample C Female 349.3
Sample D Female 350.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
71608208 Antisense, RP_050927_01_B04, Mouse strain C57BL/6J (56 days, male) 24.3
75773511 Antisense, RP_060530_01_A01, Mouse strain C57BL/6J (56 days, male) 21.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.