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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.7 nTPM
HPA:57.7 nTPM
GTEx:139.2 nTPM
FANTOM5:81.0 Scaled Tags Per Million
Pig:60.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 57.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 45.2
1981 Female, age 72, midline 48.5
2194 Female, age 79, both hemispheres 48.1
2048 Male, age 55, midline 44.5
2816 Male, age 47, midline 43.7
2565 Male, age 75, midline 41.0
Cervical spinal cord, dorsal horn
nTPM: 57.7
2297 Male, age 75, both hemispheres 70.0
2296 Male, age 66, both hemispheres 62.8
2069 Male, age 47, both hemispheres 61.3
1877 Male, age 55, unknown 53.6
2721 Male, age 90, both hemispheres 52.1
2173 Female, age 72, unknown 46.3
Cervical spinal cord, ventral horn
nTPM: 43.7
2480 Male, age 75, both hemispheres 50.9
2068 Male, age 55, unknown 48.1
2820 Female, age 79, both hemispheres 44.9
2295 Male, age 66, both hemispheres 42.4
2809 Male, age 90, both hemispheres 39.0
2098 Female, age 72, unknown 37.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 139.2
Samples: 159

Max nTPM: 324.2
Min nTPM: 32.1
Std nTPM: 43.8
Median nTPM: 133.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 324.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 250.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 239.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 227.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 222.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 220.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 218.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 215.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 209.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 206.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 206.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 201.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 200.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 198.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 198.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 197.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 195.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 191.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 191.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 190.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 188.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 187.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 186.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 184.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 183.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 183.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 181.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 181.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 179.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 178.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 177.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 173.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 173.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 171.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 169.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 169.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 167.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 167.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 167.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 166.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 164.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 163.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 162.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 162.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 162.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 161.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 161.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 160.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 159.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 159.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 158.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 157.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 156.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 155.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 154.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 153.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 153.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 152.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 152.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 150.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 149.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 149.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 149.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 149.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 148.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 146.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 145.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 144.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 143.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 142.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 140.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 139.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 136.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 136.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 133.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 132.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 131.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 130.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 126.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 126.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 125.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 124.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 124.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 124.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 122.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 121.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 121.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 120.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 120.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 119.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 119.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 118.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 117.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 117.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 117.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 116.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 116.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 115.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 115.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 115.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 114.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 112.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 111.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 111.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 110.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 110.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 109.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 109.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 108.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 107.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 107.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 106.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 104.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 103.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 103.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 102.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 102.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 101.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 100.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 99.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 99.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 97.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 97.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 95.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 94.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 93.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 92.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 91.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 91.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 89.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 88.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 88.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 85.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 84.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 81.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 81.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 79.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 78.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 69.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 68.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 66.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 35.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 32.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 81.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 81.0
FF:10181-103D1 60 years, female 93.8
FF:10159-103A6 76 years, female 68.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.4
Samples: 4

Max nTPM: 79.2
Min nTPM: 30.7
Sample A Female 79.2
Sample B Female 45.5
Sample C Male 30.7
Sample D Male 62.1
Ventral spinal cord
nTPM: 60.9
Samples: 4

Max nTPM: 66.2
Min nTPM: 55.8
Sample A Female 61.7
Sample B Female 66.2
Sample C Male 55.8
Sample D Male 59.7

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