MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:83.3 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:65.1 nTPM
Mouse:175.8 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.1
2219 Male, age 76, both hemispheres 40.7
1870 Female, age 42, unknown 40.5
2411 Female, age 72, unknown 40.1
2019 Male, age 18, unknown 39.5
1830 Male, age 51, unknown 39.4
2828 Female, age 72, unknown 39.2
1833 Male, age 53, unknown 38.7
2586 Male, age 75, left hemisphere 38.2
2666 Male, age 74, left hemisphere 37.8
1827 Male, age 72, unknown 36.6
Dorsal raphe nucleus
nTPM: 40.2
2750 Male, age 76, both hemispheres 43.7
1828 Male, age 53, unknown 40.3
2298 Female, age 72, unknown 40.0
2047 Male, age 72, unknown 39.0
2016 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 39.4
2097 Female, age 72, unknown 41.0
1848 Female, age 42, unknown 39.9
2849 Male, age 72, unknown 38.5
1890 Male, age 53, unknown 38.1
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Pedunculopontine tegmental nucleus
nTPM: 39.8
2334 Male, age 80, both hemispheres 41.1
1921 Female, age 85, both hemispheres 40.7
2338 Male, age 61, both hemispheres 37.6
Periaquaductal grey, anterior
nTPM: 38.8
2502 Female, age 75, unknown 40.1
1947 Male, age 18, unknown 38.8
1795 Male, age 51, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 38.9
2850 Male, age 76, both hemispheres 39.8
1840 Male, age 53, unknown 39.6
2464 Female, age 72, unknown 38.5
1831 Male, age 72, unknown 37.6
Periaquaductal grey, lateral
nTPM: 39.2
2272 Male, age 74, both hemispheres 41.0
2053 Male, age 18, unknown 39.8
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 39.6
2224 Female, age 72, unknown 42.0
1815 Male, age 53, unknown 41.7
2667 Female, age 75, unknown 41.5
1817 Female, age 42, unknown 40.9
2316 Male, age 76, right hemisphere 40.4
1816 Male, age 51, unknown 40.0
2007 Male, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 39.3
2825 Male, age 18, unknown 38.2
2407 Male, age 75, both hemispheres 36.7
1944 Female, age 72, unknown 35.2
Red nucleus
nTPM: 40.7
1821 Female, age 72, unknown 43.4
2823 Male, age 76, right hemisphere 42.9
2503 Female, age 72, unknown 41.7
2227 Male, age 72, unknown 41.5
1904 Male, age 53, unknown 41.4
2769 Male, age 72, unknown 41.4
1954 Female, age 42, unknown 41.2
2785 Male, age 18, unknown 40.7
1865 Male, age 51, unknown 40.5
2725 Female, age 75, unknown 39.8
2588 Male, age 74, left hemisphere 38.2
2584 Male, age 75, left hemisphere 35.7
Substantia nigra
nTPM: 39.2
2241 Male, age 72, unknown 43.4
1916 Female, age 42, unknown 42.8
1889 Female, age 72, unknown 40.8
1851 Male, age 51, unknown 40.7
2665 Male, age 74, both hemispheres 39.6
2699 Male, age 18, unknown 39.6
1941 Male, age 53, unknown 36.8
2590 Female, age 75, unknown 36.8
2583 Male, age 75, right hemisphere 36.0
2409 Female, age 72, unknown 35.4
Superior colliculus
nTPM: 39.3
1913 Female, age 42, unknown 41.9
2587 Male, age 74, left hemisphere 39.8
1995 Male, age 72, unknown 39.6
2087 Female, age 72, unknown 39.4
1895 Male, age 76, right hemisphere 39.1
2668 Female, age 75, unknown 39.1
1839 Male, age 51, unknown 39.0
2261 Male, age 18, unknown 38.6
1796 Male, age 53, unknown 38.5
2664 Male, age 75, both hemispheres 38.3
Ventral tegmental area
nTPM: 40.3
2218 Male, age 76, both hemispheres 42.0
2021 Male, age 53, unknown 41.4
1915 Female, age 42, unknown 40.8
2223 Female, age 72, unknown 39.2
2410 Female, age 72, unknown 39.2
1942 Male, age 51, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.3
Samples: 139

Max nTPM: 159.8
Min nTPM: 43.8
Std nTPM: 18.7
Median nTPM: 81.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 159.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 155.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 139.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 134.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 120.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 118.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 118.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 116.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 112.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 109.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 108.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.1
Pig sample Sample description nTPM
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 76.9
Min nTPM: 46.9
Sample A Female 76.9
Sample B Female 65.7
Sample C Male 58.3
Sample D Male 46.9
Periaqueductal gray
nTPM: 54.5
Samples: 3

Max nTPM: 61.4
Min nTPM: 46.2
Sample B Female 55.9
Sample C Male 61.4
Sample D Male 46.2
Substantia nigra
nTPM: 63.9
Samples: 4

Max nTPM: 82.0
Min nTPM: 51.1
Sample A Female 82.0
Sample B Female 55.8
Sample C Male 66.5
Sample D Male 51.1
Superior colliculi
nTPM: 65.2
Samples: 4

Max nTPM: 78.4
Min nTPM: 58.9
Sample A Female 78.4
Sample B Female 58.9
Sample C Male 64.4
Sample D Male 58.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 175.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 175.8
Samples: 4

Max nTPM: 185.3
Min nTPM: 166.6
Sample A Male 178.5
Sample B Male 166.6
Sample C Female 172.9
Sample D Female 185.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
69783071 Antisense, RP_050505_04_C10, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.