MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:34.2 nTPM
FANTOM5:61.7 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:10.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.1
1833 Male, age 53, unknown 32.5
2586 Male, age 75, left hemisphere 32.0
1827 Male, age 72, unknown 31.8
2219 Male, age 76, both hemispheres 31.8
1870 Female, age 42, unknown 31.4
2828 Female, age 72, unknown 31.4
2019 Male, age 18, unknown 31.0
1830 Male, age 51, unknown 30.4
2411 Female, age 72, unknown 29.6
2666 Male, age 74, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 32.3
2298 Female, age 72, unknown 34.8
2047 Male, age 72, unknown 33.0
2016 Female, age 72, unknown 31.8
1828 Male, age 53, unknown 31.7
2750 Male, age 76, both hemispheres 30.5
Inferior colliculus
nTPM: 31.4
1890 Male, age 53, unknown 32.5
2849 Male, age 72, unknown 31.7
1848 Female, age 42, unknown 31.0
2097 Female, age 72, unknown 30.2
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Pedunculopontine tegmental nucleus
nTPM: 30.3
1921 Female, age 85, both hemispheres 32.0
2334 Male, age 80, both hemispheres 30.8
2338 Male, age 61, both hemispheres 28.2
Periaquaductal grey, anterior
nTPM: 31.9
1795 Male, age 51, unknown 32.8
1947 Male, age 18, unknown 32.5
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 32.3
2850 Male, age 76, both hemispheres 35.9
1831 Male, age 72, unknown 31.7
2464 Female, age 72, unknown 31.0
1840 Male, age 53, unknown 30.5
Periaquaductal grey, lateral
nTPM: 33.9
2272 Male, age 74, both hemispheres 38.3
2140 Male, age 76, both hemispheres 32.3
2053 Male, age 18, unknown 31.2
Pretectal area
nTPM: 33.1
2667 Female, age 75, unknown 36.8
2273 Male, age 74, both hemispheres 35.6
1816 Male, age 51, unknown 33.8
2224 Female, age 72, unknown 33.0
2825 Male, age 18, unknown 33.0
2407 Male, age 75, both hemispheres 32.9
2007 Male, age 72, unknown 32.6
1944 Female, age 72, unknown 31.9
1815 Male, age 53, unknown 31.5
1817 Female, age 42, unknown 31.3
2316 Male, age 76, right hemisphere 31.3
Red nucleus
nTPM: 33.1
2725 Female, age 75, unknown 36.1
2588 Male, age 74, left hemisphere 35.4
1904 Male, age 53, unknown 34.2
2227 Male, age 72, unknown 33.4
2823 Male, age 76, right hemisphere 33.4
2769 Male, age 72, unknown 33.1
2503 Female, age 72, unknown 32.6
2785 Male, age 18, unknown 32.3
2584 Male, age 75, left hemisphere 32.2
1865 Male, age 51, unknown 32.0
1821 Female, age 72, unknown 31.6
1954 Female, age 42, unknown 30.9
Substantia nigra
nTPM: 30.9
1916 Female, age 42, unknown 33.6
2699 Male, age 18, unknown 33.4
1851 Male, age 51, unknown 32.3
2583 Male, age 75, right hemisphere 31.8
2590 Female, age 75, unknown 30.3
1889 Female, age 72, unknown 30.2
1941 Male, age 53, unknown 30.1
2409 Female, age 72, unknown 29.4
2665 Male, age 74, both hemispheres 29.4
2241 Male, age 72, unknown 28.8
Superior colliculus
nTPM: 31.5
2664 Male, age 75, both hemispheres 34.1
1796 Male, age 53, unknown 32.6
1995 Male, age 72, unknown 32.6
1895 Male, age 76, right hemisphere 32.5
2587 Male, age 74, left hemisphere 32.3
2261 Male, age 18, unknown 31.7
2087 Female, age 72, unknown 31.0
1839 Male, age 51, unknown 30.5
1913 Female, age 42, unknown 30.0
2668 Female, age 75, unknown 28.0
Ventral tegmental area
nTPM: 31.6
2223 Female, age 72, unknown 32.1
1915 Female, age 42, unknown 31.7
2218 Male, age 76, both hemispheres 31.7
2021 Male, age 53, unknown 31.6
1942 Male, age 51, unknown 31.4
2410 Female, age 72, unknown 31.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.2
Samples: 139

Max nTPM: 60.7
Min nTPM: 18.4
Std nTPM: 6.5
Median nTPM: 34.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 60.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 47.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 46.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 44.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.7
FF:10158-103A5 76 years, female 61.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.2
Min nTPM: 27.9
Sample A Female 38.1
Sample B Female 27.9
Sample C Male 38.2
Sample D Male 34.9
Periaqueductal gray
nTPM: 32.7
Samples: 3

Max nTPM: 35.2
Min nTPM: 31.2
Sample B Female 31.2
Sample C Male 35.2
Sample D Male 31.7
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 33.7
Min nTPM: 26.3
Sample A Female 33.7
Sample B Female 26.3
Sample C Male 30.8
Sample D Male 29.7
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 37.8
Min nTPM: 30.4
Sample A Female 34.0
Sample B Female 30.4
Sample C Male 37.8
Sample D Male 33.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.1
Sample A Male 10.8
Sample B Male 9.1
Sample C Female 10.3
Sample D Female 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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