MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:327.1 nTPM
HPA:327.1 nTPM
GTEx:174.2 nTPM
FANTOM5:970.7 Scaled Tags Per Million
Pig:291.0 nTPM
Mouse:133.8 nTPM
Allen mouse:15.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 327.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 279.2
2828 Female, age 72, unknown 336.3
1870 Female, age 42, unknown 335.8
2411 Female, age 72, unknown 315.8
1833 Male, age 53, unknown 310.1
1830 Male, age 51, unknown 295.4
2586 Male, age 75, left hemisphere 291.0
2019 Male, age 18, unknown 271.3
1827 Male, age 72, unknown 238.9
2219 Male, age 76, both hemispheres 219.6
2666 Male, age 74, left hemisphere 177.9
Dorsal raphe nucleus
nTPM: 257.3
2750 Male, age 76, both hemispheres 318.8
2016 Female, age 72, unknown 280.0
1828 Male, age 53, unknown 240.7
2298 Female, age 72, unknown 232.7
2047 Male, age 72, unknown 214.5
Inferior colliculus
nTPM: 230.1
2097 Female, age 72, unknown 243.2
1848 Female, age 42, unknown 241.2
1890 Male, age 53, unknown 221.2
2849 Male, age 72, unknown 214.8
Median raphe nucleus
nTPM: 186.7
2220 Male, age 76, midline 186.7
Pedunculopontine tegmental nucleus
nTPM: 214.4
1921 Female, age 85, both hemispheres 244.9
2334 Male, age 80, both hemispheres 234.0
2338 Male, age 61, both hemispheres 164.2
Periaquaductal grey, anterior
nTPM: 238.6
2502 Female, age 75, unknown 288.3
1795 Male, age 51, unknown 224.4
1947 Male, age 18, unknown 203.2
Periaquaductal grey, dorsal
nTPM: 206.9
2464 Female, age 72, unknown 243.8
1831 Male, age 72, unknown 219.8
1840 Male, age 53, unknown 191.4
2850 Male, age 76, both hemispheres 172.8
Periaquaductal grey, lateral
nTPM: 224.2
2053 Male, age 18, unknown 271.6
2140 Male, age 76, both hemispheres 204.0
2272 Male, age 74, both hemispheres 196.9
Pretectal area
nTPM: 244.9
2667 Female, age 75, unknown 309.6
2316 Male, age 76, right hemisphere 307.6
2273 Male, age 74, both hemispheres 276.6
1815 Male, age 53, unknown 266.6
2407 Male, age 75, both hemispheres 248.3
1817 Female, age 42, unknown 236.4
2825 Male, age 18, unknown 232.5
2224 Female, age 72, unknown 221.4
1944 Female, age 72, unknown 216.7
2007 Male, age 72, unknown 195.9
1816 Male, age 51, unknown 182.7
Red nucleus
nTPM: 327.1
1904 Male, age 53, unknown 387.8
2227 Male, age 72, unknown 382.7
1821 Female, age 72, unknown 379.4
2769 Male, age 72, unknown 379.3
2503 Female, age 72, unknown 359.3
2823 Male, age 76, right hemisphere 354.5
1954 Female, age 42, unknown 350.6
1865 Male, age 51, unknown 347.3
2785 Male, age 18, unknown 336.3
2588 Male, age 74, left hemisphere 251.7
2725 Female, age 75, unknown 215.6
2584 Male, age 75, left hemisphere 180.1
Substantia nigra
nTPM: 217.7
1851 Male, age 51, unknown 268.8
2699 Male, age 18, unknown 249.4
2409 Female, age 72, unknown 231.4
1889 Female, age 72, unknown 227.7
2583 Male, age 75, right hemisphere 225.0
2590 Female, age 75, unknown 220.1
1916 Female, age 42, unknown 218.0
1941 Male, age 53, unknown 195.1
2241 Male, age 72, unknown 175.5
2665 Male, age 74, both hemispheres 165.9
Superior colliculus
nTPM: 286.5
1995 Male, age 72, unknown 399.7
1913 Female, age 42, unknown 391.7
2664 Male, age 75, both hemispheres 295.9
1796 Male, age 53, unknown 268.8
1839 Male, age 51, unknown 268.0
1895 Male, age 76, right hemisphere 265.0
2668 Female, age 75, unknown 262.1
2587 Male, age 74, left hemisphere 249.5
2087 Female, age 72, unknown 232.6
2261 Male, age 18, unknown 231.6
Ventral tegmental area
nTPM: 245.1
2410 Female, age 72, unknown 311.0
1915 Female, age 42, unknown 251.8
2223 Female, age 72, unknown 245.6
1942 Male, age 51, unknown 242.8
2021 Male, age 53, unknown 217.8
2218 Male, age 76, both hemispheres 201.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.2
Samples: 139

Max nTPM: 619.2
Min nTPM: 59.8
Std nTPM: 77.3
Median nTPM: 154.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 619.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 463.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 457.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 381.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 359.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 349.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 320.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 316.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 284.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 273.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 261.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 970.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 970.7
FF:10158-103A5 76 years, female 970.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 291.0
Pig sample Sample description nTPM
Midbrain
nTPM: 291.0
Samples: 4

Max nTPM: 396.8
Min nTPM: 226.6
Sample A Female 396.8
Sample B Female 311.4
Sample C Male 229.1
Sample D Male 226.6
Periaqueductal gray
nTPM: 238.4
Samples: 3

Max nTPM: 284.3
Min nTPM: 205.9
Sample B Female 284.3
Sample C Male 205.9
Sample D Male 225.1
Substantia nigra
nTPM: 290.7
Samples: 4

Max nTPM: 397.0
Min nTPM: 214.6
Sample A Female 298.2
Sample B Female 214.6
Sample C Male 253.0
Sample D Male 397.0
Superior colliculi
nTPM: 275.8
Samples: 4

Max nTPM: 335.4
Min nTPM: 160.1
Sample A Female 335.4
Sample B Female 160.1
Sample C Male 274.8
Sample D Male 332.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 133.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 133.8
Samples: 4

Max nTPM: 136.5
Min nTPM: 131.5
Sample A Male 136.5
Sample B Male 131.5
Sample C Female 133.4
Sample D Female 133.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
71836881 Antisense, RP_051017_02_E11, Mouse strain C57BL/6J (56 days, male) 19.0
68633038 Antisense, RP_050125_02_C10, Mouse strain C57BL/6J (56 days, male) 11.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.