MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.8 nTPM
HPA:31.8 nTPM
GTEx:35.3 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:125.0 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.5
2019 Male, age 18, unknown 31.6
2411 Female, age 72, unknown 30.0
2219 Male, age 76, both hemispheres 29.3
1870 Female, age 42, unknown 29.1
1830 Male, age 51, unknown 28.9
1833 Male, age 53, unknown 28.3
2828 Female, age 72, unknown 28.0
1827 Male, age 72, unknown 27.9
2586 Male, age 75, left hemisphere 26.8
2666 Male, age 74, left hemisphere 24.8
Dorsal raphe nucleus
nTPM: 28.8
2750 Male, age 76, both hemispheres 30.4
1828 Male, age 53, unknown 29.2
2016 Female, age 72, unknown 28.7
2298 Female, age 72, unknown 28.4
2047 Male, age 72, unknown 27.3
Inferior colliculus
nTPM: 30.1
2097 Female, age 72, unknown 30.8
1890 Male, age 53, unknown 30.7
1848 Female, age 42, unknown 29.5
2849 Male, age 72, unknown 29.4
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Pedunculopontine tegmental nucleus
nTPM: 31.8
2338 Male, age 61, both hemispheres 34.1
1921 Female, age 85, both hemispheres 31.4
2334 Male, age 80, both hemispheres 30.1
Periaquaductal grey, anterior
nTPM: 27.2
1947 Male, age 18, unknown 29.4
2502 Female, age 75, unknown 26.2
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 28.4
1831 Male, age 72, unknown 29.3
2464 Female, age 72, unknown 28.5
2850 Male, age 76, both hemispheres 28.5
1840 Male, age 53, unknown 27.5
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 29.7
2053 Male, age 18, unknown 27.9
2140 Male, age 76, both hemispheres 26.8
Pretectal area
nTPM: 29.5
1944 Female, age 72, unknown 31.2
1817 Female, age 42, unknown 31.1
2007 Male, age 72, unknown 30.7
2407 Male, age 75, both hemispheres 30.1
2316 Male, age 76, right hemisphere 29.7
2667 Female, age 75, unknown 29.5
1816 Male, age 51, unknown 29.0
2273 Male, age 74, both hemispheres 29.0
1815 Male, age 53, unknown 28.8
2224 Female, age 72, unknown 28.2
2825 Male, age 18, unknown 26.9
Red nucleus
nTPM: 31.0
1821 Female, age 72, unknown 35.0
1865 Male, age 51, unknown 33.1
2823 Male, age 76, right hemisphere 33.1
1954 Female, age 42, unknown 32.6
2503 Female, age 72, unknown 32.1
2725 Female, age 75, unknown 31.5
2785 Male, age 18, unknown 31.3
2227 Male, age 72, unknown 31.0
1904 Male, age 53, unknown 30.5
2769 Male, age 72, unknown 29.5
2588 Male, age 74, left hemisphere 26.5
2584 Male, age 75, left hemisphere 26.0
Substantia nigra
nTPM: 30.6
2241 Male, age 72, unknown 34.4
1941 Male, age 53, unknown 33.3
1916 Female, age 42, unknown 31.7
1889 Female, age 72, unknown 31.4
2409 Female, age 72, unknown 31.0
1851 Male, age 51, unknown 30.8
2699 Male, age 18, unknown 30.8
2590 Female, age 75, unknown 28.7
2583 Male, age 75, right hemisphere 28.3
2665 Male, age 74, both hemispheres 25.2
Superior colliculus
nTPM: 28.4
1895 Male, age 76, right hemisphere 32.1
2587 Male, age 74, left hemisphere 32.0
1913 Female, age 42, unknown 31.4
2668 Female, age 75, unknown 30.3
1796 Male, age 53, unknown 27.9
2087 Female, age 72, unknown 27.4
1839 Male, age 51, unknown 27.3
1995 Male, age 72, unknown 26.6
2261 Male, age 18, unknown 25.3
2664 Male, age 75, both hemispheres 23.9
Ventral tegmental area
nTPM: 29.3
1915 Female, age 42, unknown 30.2
2218 Male, age 76, both hemispheres 29.6
2223 Female, age 72, unknown 29.3
2410 Female, age 72, unknown 29.3
1942 Male, age 51, unknown 29.0
2021 Male, age 53, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 139

Max nTPM: 75.5
Min nTPM: 17.3
Std nTPM: 7.1
Median nTPM: 34.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 58.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 46.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 46.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 44.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 44.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.2
FF:10158-103A5 76 years, female 86.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 32.0
Min nTPM: 19.3
Sample A Female 32.0
Sample B Female 24.0
Sample C Male 20.8
Sample D Male 19.3
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 22.5
Min nTPM: 20.4
Sample B Female 21.9
Sample C Male 22.5
Sample D Male 20.4
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 28.6
Min nTPM: 17.7
Sample A Female 28.6
Sample B Female 17.7
Sample C Male 24.1
Sample D Male 20.7
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 26.7
Min nTPM: 16.2
Sample A Female 26.7
Sample B Female 16.2
Sample C Male 25.4
Sample D Male 22.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.1
Samples: 4

Max nTPM: 128.4
Min nTPM: 122.7
Sample A Male 122.7
Sample B Male 128.4
Sample C Female 125.8
Sample D Female 123.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
69028557 Antisense, RP_050316_01_E09, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.