BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.1 nTPM
HPA:6.1 nTPM
GTEx:23.7 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:18.6 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047598
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.3
2481 Female, age 94, left hemisphere 5.9
1781 Male, age 74, unknown 5.6
2846 Female, age 79, unknown 5.5
2289 Male, age 61, right hemisphere 5.4
2288 Male, age 75, left hemisphere 5.2
2290 Female, age 72, unknown 5.2
1854 Male, age 80, left hemisphere 5.1
1857 Female, age 85, left hemisphere 4.9
Claustrum
nTPM: 4.9
2292 Female, age 85, both hemispheres 5.3
1956 Male, age 74, unknown 5.1
2284 Female, age 91, both hemispheres 5.0
2392 Female, age 94, both hemispheres 5.0
2645 Female, age 72, unknown 5.0
2568 Male, age 61, both hemispheres 4.7
2196 Female, age 79, unknown 4.6
2198 Male, age 80, both hemispheres 4.6
2491 Male, age 75, both hemispheres 4.6
Globus pallidus, externus
nTPM: 6.1
2772 Female, age 79, unknown 6.8
1996 Male, age 80, right hemisphere 6.3
2395 Male, age 75, both hemispheres 6.3
2646 Male, age 61, right hemisphere 5.9
2567 Female, age 72, unknown 5.0
Globus pallidus, internus
nTPM: 5.8
2778 Female, age 91, both hemispheres 6.8
2483 Female, age 94, right hemisphere 6.1
2566 Female, age 72, unknown 5.9
2037 Male, age 80, right hemisphere 5.8
1818 Male, age 74, unknown 5.6
2287 Male, age 75, right hemisphere 5.6
2111 Female, age 85, right hemisphere 4.8
Nucleus accumbens
nTPM: 5.3
2391 Female, age 94, left hemisphere 5.8
2286 Male, age 75, left hemisphere 5.7
2698 Female, age 72, unknown 5.4
2732 Male, age 80, right hemisphere 5.3
1783 Male, age 74, unknown 5.2
1856 Female, age 91, right hemisphere 5.1
2824 Male, age 61, right hemisphere 5.1
1806 Female, age 85, left hemisphere 4.9
Nucleus basalis of Meynert
nTPM: 5.5
2569 Male, age 61, both hemispheres 6.5
2821 Male, age 75, both hemispheres 5.5
2393 Male, age 80, right hemisphere 5.2
2484 Female, age 94, left hemisphere 4.9
Nucleus of the diagonal band
nTPM: 5.0
1812 Female, age 91, both hemispheres 5.5
1979 Male, age 74, unknown 5.3
2029 Male, age 61, right hemisphere 5.1
2775 Male, age 80, right hemisphere 4.9
2195 Female, age 85, both hemispheres 4.5
Olfactory tubercle
nTPM: 5.2
1846 Male, age 80, right hemisphere 5.4
2487 Female, age 94, left hemisphere 5.3
2856 Male, age 75, right hemisphere 5.1
1998 Female, age 91, both hemispheres 5.0
Putamen
nTPM: 5.1
1838 Male, age 80, right hemisphere 5.8
2482 Female, age 94, left hemisphere 5.8
2466 Female, age 79, unknown 5.2
2489 Female, age 72, unknown 5.2
1937 Female, age 91, right hemisphere 5.1
2647 Male, age 75, left hemisphere 4.6
1829 Male, age 74, unknown 4.2
Septal nuclei
nTPM: 5.2
2031 Female, age 72, unknown 5.6
2009 Female, age 91, both hemispheres 5.4
2199 Male, age 80, right hemisphere 5.4
1960 Male, age 74, unknown 5.3
2059 Female, age 85, both hemispheres 5.3
2394 Male, age 61, left hemisphere 4.8
2629 Female, age 94, right hemisphere 4.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 65.9
Min nTPM: 10.1
Std nTPM: 7.0
Median nTPM: 20.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 65.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 40.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 38.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 36.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 35.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 34.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 34.6
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 78.7
Min nTPM: 8.5
Std nTPM: 9.3
Median nTPM: 20.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 70.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 69.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 52.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 51.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 49.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 46.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 44.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 44.0
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 42.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 41.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 23.7
Samples: 205

Max nTPM: 55.3
Min nTPM: 9.2
Std nTPM: 7.7
Median nTPM: 22.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 55.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 54.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 49.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 47.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 46.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 46.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 42.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 40.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 39.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 38.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 38.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.5
FF:10164-103B2 76 years, female 11.5
Globus pallidus
Scaled Tags Per Million: 14.7
FF:10175-103C4 60 years, female 16.5
FF:10161-103A8 76 years, female 12.8
Nucleus accumbens
Scaled Tags Per Million: 11.6
FF:10037-101F1 23-56 years, mixed 11.6
Putamen
Scaled Tags Per Million: 9.2
FF:10176-103C5 60 years, female 9.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.9
Pig sample Sample description nTPM
Caudate
nTPM: 11.7
Samples: 4

Max nTPM: 12.4
Min nTPM: 11.2
Sample A Female 11.2
Sample B Female 11.8
Sample C Male 11.4
Sample D Male 12.4
Putamen
nTPM: 11.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.1
Sample A Female 11.3
Sample B Female 12.4
Sample C Male 12.9
Sample D Male 11.1
Septum
nTPM: 11.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.1
Sample A Female 12.8
Sample B Female 13.0
Sample C Male 10.1
Sample D Male 10.6
Ventral pallidum
nTPM: 11.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.8
Sample A Female 12.7
Sample B Female 11.7
Sample C Male 10.8
Sample D Male 12.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.8
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.3
Sample A Male 13.7
Sample B Male 15.5
Sample C Female 13.7
Sample D Female 12.3
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.6
Sample A Male 13.4
Sample B Male 11.6
Sample C Female 14.6
Sample D Female 12.3
Ventral forebrain
nTPM: 18.6
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.4
Sample A Male 21.2
Sample B Male 14.4
Sample C Female 21.6
Sample D Female 17.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
67815954 Antisense, RP_040920_02_C07, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.2
67815954 Antisense, RP_040920_02_C07, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.