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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
79.040
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:52.2 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:12.1 nTPM
Mouse:131.3 nTPM

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB078782
Amygdala mean intensity 79.040
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 79.040
Basal medial amygdaloid nucleus 61.595
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 60.724
Cortical amygdala 56.332
Central amygdala 62.434
Medial amygdaloid nucleus 60.826

AMYGDALA - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Amygdala
nTPM: 0.0
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2517 Female, age 94, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 11.2
2685 Female, age 94, left hemisphere 34.4
2827 Female, age 67, right hemisphere 33.1
1955 Male, age 76, both hemispheres 0.0
2110 Male, age 80, left hemisphere 0.0
2243 Female, age 91, right hemisphere 0.0
2609 Male, age 75, right hemisphere 0.0
Central amygdala
nTPM: 2.9
2826 Female, age 94, left hemisphere 14.5
1905 Male, age 76, both hemispheres 0.0
2239 Male, age 80, left hemisphere 0.0
2515 Male, age 75, right hemisphere 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 10.1
2535 Female, age 67, right hemisphere 53.7
2829 Male, age 80, left hemisphere 5.0
2429 Female, age 94, left hemisphere 2.1
2240 Male, age 76, both hemispheres 0.0
2242 Female, age 91, right hemisphere 0.0
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 11.8
2256 Male, age 80, left hemisphere 36.9
2534 Female, age 94, left hemisphere 34.3
1883 Male, age 76, both hemispheres 0.0
2255 Female, age 91, right hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 0.0
1974 Female, age 91, both hemispheres 0.0
2201 Male, age 74, unknown 0.0
2486 Female, age 94, both hemispheres 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 52.2
Samples: 152

Max nTPM: 179.2
Min nTPM: 1.2
Std nTPM: 32.0
Median nTPM: 44.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 179.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 154.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 146.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 142.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 123.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 121.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 120.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 112.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 106.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 98.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 91.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 89.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 86.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 86.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 85.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 84.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 82.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 79.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 77.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 72.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 72.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 72.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 72.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 70.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 67.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 66.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 66.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 65.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 64.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 63.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 63.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 62.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 62.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 59.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 58.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 57.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 57.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 56.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 55.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 55.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 54.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 54.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 53.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 52.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 52.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 49.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 49.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 48.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 48.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 45.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 45.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 44.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 44.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 44.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 42.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 42.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 41.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 41.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 40.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 39.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 39.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 38.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 37.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 37.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 36.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 36.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 36.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 36.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 35.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 35.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 35.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 35.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 35.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 33.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 33.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 31.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 30.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 30.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 30.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 30.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 29.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 29.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 28.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 27.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 27.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 26.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 26.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 26.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 26.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 24.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 24.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 24.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 23.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 23.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 22.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 22.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 22.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 21.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 21.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 20.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 20.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 20.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 17.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 15.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 15.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 15.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 14.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 12.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 9.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1.9
FF:10151-102I7 76 years, female 1.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.1
Pig sample Sample description nTPM
Amygdala
nTPM: 12.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 8.4
Sample A Female 17.1
Sample B Female 8.4
Sample C Male 10.7
Sample D Male 12.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 131.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 131.3
Samples: 4

Max nTPM: 162.1
Min nTPM: 117.1
Sample A Male 125.6
Sample B Male 120.4
Sample C Female 162.1
Sample D Female 117.1

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