Metabolic pathway information for MYO5B - The Human Protein Atlas

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MYO5B

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Cluster

Cluster

Cluster

Pathway

SUMMARY

TISSUE

BRAIN

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TISSUE CELL

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STRUCTURE

METABOLIC

MYO5B

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	MYO5B
Gene descriptionⁱ Full gene name according to HGNC.	Myosin VB
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Human disease related genes Metabolic proteins Plasma proteins
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of data presented in the Tissue section, with a representative image of protein expression (left) and an interactive chart showing the tissue-specific mRNA expression (right). The image and the chart are clickable and will redirect to more Tissue data. This section contains information regarding the expression profiles of protein-coding genes in normal human tissue, both on the mRNA and protein level. The protein expression data is derived from antibody-based protein profiling using immunohistochemistry. Read more
RNA tissue specificityⁱ The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected. Read more	Tissue enhanced (intestine)
RNA tissue distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on a combination of data from HPA and GTEX. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

METABOLIC SUMMARYⁱ For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
Gene MYO5B is associated with 42 reactions in 10 different subsystems, and present in the compartments: Cytosol, Mitochondria, Peroxisome. Provided by metabolicatlas.org
Pathway / Subsystem	Subsystem-associated compartments	# proteins	# metabolites	# reactions for this protein
Leukotriene metabolism	Peroxisome, Mitochondria, Cytosol, Endoplasmic reticulum, Nucleus, Extracellular	206	105	6
Beta oxidation of even-chain fatty acids (peroxisomal)	Peroxisome	9	59	11
Beta oxidation of di-unsaturated fatty acids (n-6) (peroxisomal)	Peroxisome	11	28	4
Beta oxidation of unsaturated fatty acids (n-9) (peroxisomal)	Peroxisome	9	47	9
Beta oxidation of unsaturated fatty acids (n-7) (peroxisomal)	Peroxisome	9	17	2
Bile acid biosynthesis	Peroxisome, Endoplasmic reticulum, Cytosol, Mitochondria, Extracellular	97	173	3
Beta oxidation of phytanic acid (peroxisomal)	Peroxisome, Cytosol	24	37	3
Omega-3 fatty acid metabolism	Cytosol, Peroxisome, Nucleus, Endoplasmic reticulum	53	73	1
Omega-6 fatty acid metabolism	Cytosol, Mitochondria, Peroxisome	39	56	2
Transport reactions	Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria	608	1603	1

METABOLICS - BETA OXIDATION OF EVEN-CHAIN FATTY ACIDS (PEROXISOMAL)ⁱ

Subsystem map not available.

Provided by metabolicatlas.org

Gene	Adipose tissue	Adrenal gland	Bone marrow	Brain	Breast	Cervix	Choroid plexus	Endometrium	Epididymis	Esophagus	Fallopian tube	Gallbladder	Heart muscle	Intestine	Kidney	Liver	Lung	Lymphoid tissue	Ovary	Pancreas	Parathyroid gland	Pituitary gland	Placenta	Prostate	Retina	Salivary gland	Seminal vesicle	Skeletal muscle	Skin	Smooth muscle	Stomach	Testis	Thyroid gland	Tongue	Urinary bladder	Vagina
ACAA1
HADHA
ACOX3
EHHADH
HSD17B4
ACOX1
MYO5B
ECI1
ECI2

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.